RNA–Protein interactions for RNA: ENST00000366764.6

CDC42BPA-202, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best) BASIC

Gene CDC42BPA, Length 10,445 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-202ENST00000366764 KIF20AO95235 890 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 DNM1Q05193 864 aaKnown RBP13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 TOM1L2Q6ZVM7 507 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 RUFY3Q7L099 469 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 IQCA1Q86XH1 822 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 RBM42Q9BTD8 480 aaKnown RBP13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 A0A087WZG4 1122 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 USO1O60763 962 aaKnown RBP13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 CHD1O14646 1710 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 ZNF500O60304 480 aaPredicted RBP13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 CACNA1FO60840 1977 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 NEO1Q92859 1461 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 DACT1Q9NYF0 836 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 CHL1O00533 1208 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 V9GYY5 206 aaPredicted RBP13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 ATP7BP35670 1465 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 SBNO1A3KN83 1393 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 MYRIPQ8NFW9 859 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 TAF4BQ92750 862 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 PHACTR3Q96KR7 559 aa13.6□□□□□ -0.23
CDC42BPA-202ENST00000366764 SYCP1Q15431 976 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 ALS2CR12Q96Q35 445 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 CCDC8Q9H0W5 538 aaPredicted RBP13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 TFIP11Q9UBB9 837 aaKnown RBP13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 SYT1P21579 422 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 MYD88Q99836 296 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 RMND1Q9NWS8 449 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 USP16Q9Y5T5 823 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 TSHZ3Q63HK5 1081 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 ZGPATQ8N5A5 531 aaKnown RBP13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 CNNM2Q9H8M5 875 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 ERICH4A6NGS2 130 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 GOLIM4O00461 696 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 SNRPA1P09661 255 aaKnown RBP13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 KIF5BP33176 963 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 IARSP41252 1262 aaKnown RBP13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 HSP90AB2PQ58FF8 381 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 PPP1R12BO60237 982 aaPredicted RBP13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 UBE3BQ7Z3V4 1068 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 SLC5A1P13866 664 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 AK2P54819 239 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 MICALCLQ6ZW33 695 aa13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 RRAGDQ9NQL2 400 aaPredicted RBP13.59□□□□□ -0.23
CDC42BPA-202ENST00000366764 MADDQ8WXG6 1647 aa13.58□□□□□ -0.23
CDC42BPA-202ENST00000366764 CCDC186Q7Z3E2 898 aa13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 CATIPQ7Z7H3 387 aa13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 OGFRQ9NZT2 677 aa13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 RTL1A6NKG5 1358 aa13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 TM6SF1Q9BZW5 370 aa13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 CHPF2Q9P2E5 772 aa13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 ZNF652Q9Y2D9 606 aa13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 CTDP1Q9Y5B0 961 aaPredicted RBP13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 CKAP4Q07065 602 aaKnown RBP13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 NAA15Q9BXJ9 866 aaKnown RBP13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 BCL11BQ9C0K0 894 aaPredicted RBP13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 LMBRD1Q9NUN5 540 aa13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 METAP2P50579 478 aaKnown RBP eCLIP13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 FBXO31Q5XUX0 539 aaPredicted RBP13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 CCDC12Q8WUD4 166 aaPredicted RBP13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 NUP88Q99567 741 aaPredicted RBP13.58□□□□□ -0.24
CDC42BPA-202ENST00000366764 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.58□□□□□ -0.241e-6■■□□□ 12.6
CDC42BPA-202ENST00000366764 UBASH3AP57075 661 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 FAM160A1Q05DH4 1040 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 TTC12Q9H892 705 aaPredicted RBP13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 IL15P40933 162 aaPredicted RBP13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 MPRIPQ6WCQ1 1025 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 TRMT1Q9NXH9 659 aaKnown RBP13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 CREB3L3Q68CJ9 461 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 BRF1Q92994 677 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 PAFAH1B1P43034 410 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 KRT23Q9C075 422 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 TUBB2AQ13885 445 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 ANKRD13DQ6ZTN6 518 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 TUBB2BQ9BVA1 445 aa13.57□□□□□ -0.24
CDC42BPA-202ENST00000366764 GOLGA8AA7E2F4 631 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 TSPYL6Q8N831 410 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 SEC63Q9UGP8 760 aaKnown RBP13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 AKAP4Q5JQC9 854 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 EFCAB6Q5THR3 1501 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 GNG11P61952 73 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 PIP4K2BP78356 416 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 IL13P35225 146 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 SGSM2O43147 1006 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 CCT2P78371 535 aaKnown RBP13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 GABPB1Q06547 395 aaPredicted RBP13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 DHX32Q7L7V1 743 aaKnown RBP13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 CEP112Q8N8E3 955 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 TSG101Q99816 390 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 RBSNQ9H1K0 784 aa13.56□□□□□ -0.24
CDC42BPA-202ENST00000366764 SETBP1Q9Y6X0 1596 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 ANKRD18BA2A2Z9 1011 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 CCDC175P0C221 793 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 IFIT3O14879 490 aaKnown RBP13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 SPTLC2O15270 562 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 BRD1O95696 1058 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 AMPD3Q01432 767 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 IMPACTQ9P2X3 320 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 HECW2Q9P2P5 1572 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 IFNL2Q8IZJ0 200 aa13.55□□□□□ -0.24
CDC42BPA-202ENST00000366764 TNNQ9UQP3 1299 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms