RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CNTROBQ8N137 903 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 GRAPLQ8TC17 118 aaPredicted RBP11.19□□□□□ -0.62
UPF2-202ENST00000357604 HOOK2Q96ED9 719 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 CLEC11AQ9Y240 323 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 PKD1L3Q7Z443 1732 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 CAMTA2O94983 1202 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 LMBR1LQ6UX01 489 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 DIAPH3Q9NSV4 1193 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 MRC1P22897 1456 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 NLRP10Q86W26 655 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 FAM89AQ96GI7 184 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 FBXO3Q9UK99 471 aa11.19□□□□□ -0.62
UPF2-202ENST00000357604 TRIM27P14373 513 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 NHSQ6T4R5 1651 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 XDHP47989 1333 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 PPIP5K2O43314 1243 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 HCLS1P14317 486 aaPredicted RBP11.18□□□□□ -0.62
UPF2-202ENST00000357604 NFIXQ14938 502 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 AACSQ86V21 672 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 DZIP1Q86YF9 867 aaKnown RBP11.18□□□□□ -0.62
UPF2-202ENST00000357604 AKT1S1Q96B36 256 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 NSFL1CQ9UNZ2 370 aaKnown RBP11.18□□□□□ -0.62
UPF2-202ENST00000357604 NUTM1Q86Y26 1132 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 TAOK3Q9H2K8 898 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 RAI14Q9P0K7 980 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 CTDP1Q9Y5B0 961 aaPredicted RBP11.18□□□□□ -0.62
UPF2-202ENST00000357604 COL18A1P39060 1754 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 RPS8P62241 208 aaKnown RBP11.18□□□□□ -0.62
UPF2-202ENST00000357604 LEMD3Q9Y2U8 911 aa11.18□□□□□ -0.62
UPF2-202ENST00000357604 CRYBG1Q9Y4K1 1723 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 TNNI2P48788 182 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 CWF19L2Q2TBE0 894 aaKnown RBP11.17□□□□□ -0.62
UPF2-202ENST00000357604 CERS3Q8IU89 383 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 CRAMP1Q96RY5 1269 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 DOT1LQ8TEK3 1739 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 KAT6BQ8WYB5 2073 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 CHAF1AQ13111 956 aaPredicted RBP11.17□□□□□ -0.62
UPF2-202ENST00000357604 INTS3Q68E01 1043 aaKnown RBP11.17□□□□□ -0.62
UPF2-202ENST00000357604 B4GALNT3Q6L9W6 998 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 PNPLA7Q6ZV29 1317 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 DENND2AQ9ULE3 1009 aa11.17□□□□□ -0.62
UPF2-202ENST00000357604 FGD1P98174 961 aa11.16□□□□□ -0.62
UPF2-202ENST00000357604 PUM3Q15397 648 aaKnown RBP11.16□□□□□ -0.62
UPF2-202ENST00000357604 CHMP4CQ96CF2 233 aa11.16□□□□□ -0.62
UPF2-202ENST00000357604 LRP2BPQ9P2M1 347 aa11.16□□□□□ -0.62
UPF2-202ENST00000357604 RGPD5Q99666 1765 aa11.16□□□□□ -0.62
UPF2-202ENST00000357604 PXDNLA1KZ92 1463 aa11.16□□□□□ -0.62
UPF2-202ENST00000357604 ZNF827Q17R98 1081 aa11.16□□□□□ -0.62
UPF2-202ENST00000357604 NACAP1Q9BZK3 213 aa11.16□□□□□ -0.62
UPF2-202ENST00000357604 ISY1Q9ULR0 285 aaKnown RBP11.16□□□□□ -0.62
UPF2-202ENST00000357604 BAG3O95817 575 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 ATP8B2P98198 1209 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 MAP3K12Q12852 859 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 ATP2B3Q16720 1220 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 ERICH6Q7L0X2 663 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 DNAJC2Q99543 621 aaKnown RBP11.15□□□□□ -0.62
UPF2-202ENST00000357604 GJA3Q9Y6H8 435 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 KDM2BQ8NHM5 1336 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 GYS1P13807 737 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 SUSD4Q5VX71 490 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 TBC1D22AQ8WUA7 517 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 CWC22Q9HCG8 908 aaKnown RBP11.15□□□□□ -0.62
UPF2-202ENST00000357604 BICC1Q9H694 974 aaKnown RBP11.15□□□□□ -0.62
UPF2-202ENST00000357604 ZNF287Q9HBT7 754 aa11.15□□□□□ -0.62
UPF2-202ENST00000357604 PRAMEF22A3QJZ6 481 aa11.15□□□□□ -0.63
UPF2-202ENST00000357604 H7C1D1 291 aa11.15□□□□□ -0.63
UPF2-202ENST00000357604 G2E3Q7L622 706 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 ZNF34Q8IZ26 560 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 C1orf115Q9H7X2 142 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 BEND3Q5T5X7 828 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 RIMBP2O15034 1052 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 PLCG2P16885 1265 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 SP8Q8IXZ3 490 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 RILPL2Q969X0 211 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 FSD1Q9BTV5 496 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 ISCA1Q9BUE6 129 aa11.14□□□□□ -0.63
UPF2-202ENST00000357604 TRIM28Q13263 835 aaKnown RBP11.13□□□□□ -0.63
UPF2-202ENST00000357604 PROSER3Q2NL68 480 aa11.13□□□□□ -0.63
UPF2-202ENST00000357604 EYA2O00167 538 aa11.13□□□□□ -0.63
UPF2-202ENST00000357604 HIBADHP31937 336 aaKnown RBP11.13□□□□□ -0.63
UPF2-202ENST00000357604 TTLL12Q14166 644 aaPredicted RBP11.13□□□□□ -0.63
UPF2-202ENST00000357604 VPS33BQ9H267 617 aa11.13□□□□□ -0.63
UPF2-202ENST00000357604 CIAO1O76071 339 aa11.13□□□□□ -0.63
UPF2-202ENST00000357604 APPP05067 770 aa11.13□□□□□ -0.63
UPF2-202ENST00000357604 PRR5LQ6MZQ0 368 aa11.13□□□□□ -0.63
UPF2-202ENST00000357604 MYO3BQ8WXR4 1341 aa11.13□□□□□ -0.63
UPF2-202ENST00000357604 RGS3P49796 1198 aa11.12□□□□□ -0.63
UPF2-202ENST00000357604 WNK3Q9BYP7 1800 aa11.12□□□□□ -0.63
UPF2-202ENST00000357604 HLFQ16534 295 aa11.12□□□□□ -0.63
UPF2-202ENST00000357604 WDR66Q8TBY9 1149 aa11.12□□□□□ -0.63
UPF2-202ENST00000357604 BSDC1Q9NW68 430 aaPredicted RBP11.12□□□□□ -0.63
UPF2-202ENST00000357604 EXOC6Q8TAG9 804 aa11.12□□□□□ -0.63
UPF2-202ENST00000357604 ZNF521Q96K83 1311 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 IQCA1LA6NCM1 817 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 SEMA3EO15041 775 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 LPIN2Q92539 896 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 JARID2Q92833 1246 aaPredicted RBP11.11□□□□□ -0.63
UPF2-202ENST00000357604 PLA2G12BQ9BX93 195 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 ABCC4O15439 1325 aa11.11□□□□□ -0.63
UPF2-202ENST00000357604 NBPF26B4DH59 902 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms