RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 COL9A1P20849 921 aa11.42□□□□□ -0.58
ATG4A-202ENST00000345734 LRP10Q7Z4F1 713 aa11.42□□□□□ -0.58
ATG4A-202ENST00000345734 XAGE3Q8WTP9 111 aa11.42□□□□□ -0.58
ATG4A-202ENST00000345734 FAM198AQ9UFP1 575 aa11.42□□□□□ -0.58
ATG4A-202ENST00000345734 LHX6Q9UPM6 363 aa11.42□□□□□ -0.58
ATG4A-202ENST00000345734 PAPPAQ13219 1627 aa11.42□□□□□ -0.58
ATG4A-202ENST00000345734 GSPT1P15170 499 aaKnown RBP11.42□□□□□ -0.58
ATG4A-202ENST00000345734 COPS6Q7L5N1 327 aa11.42□□□□□ -0.58
ATG4A-202ENST00000345734 PPP1R42Q7Z4L9 355 aa11.42□□□□□ -0.58
ATG4A-202ENST00000345734 PLCH1Q4KWH8 1693 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 KCPQ6ZWJ8 1503 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 DDX58O95786 925 aaKnown RBP11.41□□□□□ -0.58
ATG4A-202ENST00000345734 SLC4A3P48751 1232 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 MFAP1P55081 439 aaKnown RBP11.41□□□□□ -0.58
ATG4A-202ENST00000345734 PRSS12P56730 875 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 MCM6Q14566 821 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 GPR153Q6NV75 609 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 RIC3Q7Z5B4 369 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 DISP2A7MBM2 1401 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 C3orf80F5H4A9 247 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 ALDH1L1O75891 902 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 SKIV2LQ15477 1246 aaKnown RBP11.41□□□□□ -0.58
ATG4A-202ENST00000345734 DOK7Q18PE1 504 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 MYSM1Q5VVJ2 828 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 CERKQ8TCT0 537 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 SSH3Q8TE77 659 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 TBC1D32Q96NH3 1257 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 ITGB4P16144 1822 aa11.41□□□□□ -0.58
ATG4A-202ENST00000345734 PTCD1O75127 700 aaKnown RBP11.4□□□□□ -0.58
ATG4A-202ENST00000345734 TTC22Q5TAA0 569 aa11.4□□□□□ -0.58
ATG4A-202ENST00000345734 UPF2Q9HAU5 1272 aaKnown RBP11.4□□□□□ -0.58
ATG4A-202ENST00000345734 C9orf78Q9NZ63 289 aaPredicted RBP11.4□□□□□ -0.58
ATG4A-202ENST00000345734 IBTKQ9P2D0 1353 aaPredicted RBP11.4□□□□□ -0.58
ATG4A-202ENST00000345734 NUTM2BA6NNL0 878 aaPredicted RBP11.39□□□□□ -0.59
ATG4A-202ENST00000345734 NUTM2EB1AL46 878 aaPredicted RBP11.39□□□□□ -0.59
ATG4A-202ENST00000345734 SRGAP3O43295 1099 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 IGKV5-2P06315 115 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 NUTM2AQ8IVF1 878 aaPredicted RBP11.39□□□□□ -0.59
ATG4A-202ENST00000345734 LINS1Q8NG48 757 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 WNK3Q9BYP7 1800 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 NBPF26B4DH59 902 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 TOM1O60784 492 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 NBPF14Q5TI25 921 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 NBPF10Q6P3W6 841 aaKnown RBP11.39□□□□□ -0.59
ATG4A-202ENST00000345734 ZNF710Q8N1W2 664 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 NBPF15Q8N660 670 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 LRRCC1Q9C099 1032 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 TMOD3Q9NYL9 352 aa11.39□□□□□ -0.59
ATG4A-202ENST00000345734 AFDNP55196 1824 aaKnown RBP11.38□□□□□ -0.59
ATG4A-202ENST00000345734 NRAPQ86VF7 1730 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 ARFGEF2Q9Y6D5 1785 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 TBC1D9Q6ZT07 1266 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 ANKRD13DQ6ZTN6 518 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 TTC13Q8NBP0 860 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 POM121Q96HA1 1249 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 MYD88Q99836 296 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 TNS2Q63HR2 1409 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 GRM8O00222 908 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 SURF6O75683 361 aaKnown RBP11.38□□□□□ -0.59
ATG4A-202ENST00000345734 TSHZ3Q63HK5 1081 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 PIGBQ92521 554 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 METTL22Q9BUU2 404 aaPredicted RBP11.38□□□□□ -0.59
ATG4A-202ENST00000345734 C22orf23Q9BZE7 217 aa11.38□□□□□ -0.59
ATG4A-202ENST00000345734 NEURL1BA8MQ27 555 aa11.37□□□□□ -0.59
ATG4A-202ENST00000345734 A1BGP04217 495 aa11.37□□□□□ -0.59
ATG4A-202ENST00000345734 KAZALD1Q96I82 304 aa11.37□□□□□ -0.59
ATG4A-202ENST00000345734 SUCLG2Q96I99 432 aa11.37□□□□□ -0.59
ATG4A-202ENST00000345734 ASAP1Q9ULH1 1129 aa11.37□□□□□ -0.59
ATG4A-202ENST00000345734 RIMBP2O15034 1052 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 PDE1AP54750 535 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 RBM46Q8TBY0 533 aaKnown RBP11.36□□□□□ -0.59
ATG4A-202ENST00000345734 TBC1D2Q9BYX2 928 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 IL1RAPL2Q9NP60 686 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 TSKSQ9UJT2 592 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 UTYO14607 1347 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 SALL3Q9BXA9 1300 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 TUBGCP6Q96RT7 1819 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 UBAP1LF5GYI3 381 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 EXOC5O00471 708 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 CDC45O75419 566 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 SDSP20132 328 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 NEXNQ0ZGT2 675 aa11.36□□□□□ -0.59
ATG4A-202ENST00000345734 RCCD1A6NED2 376 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 MTX1Q13505 466 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 GCKRQ14397 625 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 TTLL7Q6ZT98 887 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 JARID2Q92833 1246 aaPredicted RBP11.35□□□□□ -0.59
ATG4A-202ENST00000345734 OSBPL3Q9H4L5 887 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 BICC1Q9H694 974 aaKnown RBP11.35□□□□□ -0.59
ATG4A-202ENST00000345734 ATG3Q9NT62 314 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 ERBB4Q15303 1308 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 SPATA31A1Q5TZJ5 1347 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 ATP5J2-PTCD1G3V325 749 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 RAB11FIP3O75154 756 aa11.35□□□□□ -0.59
ATG4A-202ENST00000345734 CLK2P49760 499 aaKnown RBP11.35□□□□□ -0.59
ATG4A-202ENST00000345734 RBM27Q9P2N5 1060 aaKnown RBP11.35□□□□□ -0.59
ATG4A-202ENST00000345734 NUP188Q5SRE5 1749 aa11.34□□□□□ -0.59
ATG4A-202ENST00000345734 SMAPO00193 183 aa11.34□□□□□ -0.59
ATG4A-202ENST00000345734 MX1P20591 662 aa11.34□□□□□ -0.59
ATG4A-202ENST00000345734 CSPP1Q1MSJ5 1256 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms