RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PHACTR3Q96KR7 559 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 GUCA1BQ9UMX6 200 aa9.99□□□□□ -0.81
RTN3-202ENST00000339997 CCDC175P0C221 793 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 UVSSAQ2YD98 709 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 OTUD7BQ6GQQ9 843 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 LARP1Q6PKG0 1096 aaKnown RBP9.98□□□□□ -0.81
RTN3-202ENST00000339997 TTC16Q8NEE8 873 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 NDUFB9Q9Y6M9 179 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 SMC5Q8IY18 1101 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 CTCFLQ8NI51 663 aaPredicted RBP9.98□□□□□ -0.81
RTN3-202ENST00000339997 METAP2P50579 478 aaKnown RBP eCLIP9.98□□□□□ -0.81
RTN3-202ENST00000339997 RNASE9P60153 205 aaKnown RBP9.98□□□□□ -0.81
RTN3-202ENST00000339997 SSRP1Q08945 709 aaKnown RBP9.98□□□□□ -0.81
RTN3-202ENST00000339997 PLEKHM2Q8IWE5 1019 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 HINFPQ9BQA5 517 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 PLEKHA4Q9H4M7 779 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 NEMFO60524 1076 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 APOBRQ0VD83 1088 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 ELF2Q15723 593 aa9.98□□□□□ -0.81
RTN3-202ENST00000339997 CROCC2H7BZ55 1655 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 CCDC194A0A1B0GVG4 234 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 USO1O60763 962 aaKnown RBP9.97□□□□□ -0.81
RTN3-202ENST00000339997 WASF1Q92558 559 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 CHPF2Q9P2E5 772 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 UBA7P41226 1012 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 IFIT5Q13325 482 aaKnown RBP9.97□□□□□ -0.81
RTN3-202ENST00000339997 LONRF3Q496Y0 759 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 RRAGBQ5VZM2 374 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 LDHAL6AQ6ZMR3 332 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 TRIM47Q96LD4 638 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 PAIP2Q9BPZ3 127 aaKnown RBP9.97□□□□□ -0.81
RTN3-202ENST00000339997 CEP131Q9UPN4 1083 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 CDK13Q14004 1512 aaKnown RBP9.97□□□□□ -0.81
RTN3-202ENST00000339997 CTAGE15A4D2H0 777 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 CTAGE8P0CG41 777 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 CTAGE6Q86UF2 777 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 CTAGE4Q8IX94 777 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 GRIN2BQ13224 1484 aa9.97□□□□□ -0.81
RTN3-202ENST00000339997 TLDC2A0PJX2 215 aa9.96□□□□□ -0.81
RTN3-202ENST00000339997 DHX58Q96C10 678 aa9.96□□□□□ -0.81
RTN3-202ENST00000339997 MAPK8IP1Q9UQF2 711 aa9.96□□□□□ -0.81
RTN3-202ENST00000339997 EZRP15311 586 aaKnown RBP9.96□□□□□ -0.81
RTN3-202ENST00000339997 CWF19L2Q2TBE0 894 aaKnown RBP9.96□□□□□ -0.81
RTN3-202ENST00000339997 CCDC40Q4G0X9 1142 aa9.96□□□□□ -0.81
RTN3-202ENST00000339997 SNX21Q969T3 373 aa9.96□□□□□ -0.81
RTN3-202ENST00000339997 ALG1Q9BT22 464 aa9.96□□□□□ -0.81
RTN3-202ENST00000339997 TMEM63CQ9P1W3 806 aa9.96□□□□□ -0.81
RTN3-202ENST00000339997 ZNF219Q9P2Y4 722 aaPredicted RBP9.96□□□□□ -0.81
RTN3-202ENST00000339997 TRMT112Q9UI30 125 aaKnown RBP9.96□□□□□ -0.81
RTN3-202ENST00000339997 CUL7Q14999 1698 aa9.96□□□□□ -0.81
RTN3-202ENST00000339997 ZNF569Q5MCW4 686 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 ANKRD44Q8N8A2 993 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 DBF4Q9UBU7 674 aaPredicted RBP9.96□□□□□ -0.82
RTN3-202ENST00000339997 STX8Q9UNK0 236 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 NMIQ13287 307 aaPredicted RBP9.96□□□□□ -0.82
RTN3-202ENST00000339997 IFT81Q8WYA0 676 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 MRPS27Q92552 414 aaKnown RBP9.96□□□□□ -0.82
RTN3-202ENST00000339997 PPP1R9BQ96SB3 815 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 USP26Q9BXU7 913 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 ZBTB40Q9NUA8 1239 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 HYPKQ9NX55 129 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 KAT6BQ8WYB5 2073 aa9.96□□□□□ -0.82
RTN3-202ENST00000339997 SUPT6HQ7KZ85 1726 aaKnown RBP9.96□□□□□ -0.82
RTN3-202ENST00000339997 GBP2P32456 591 aaPredicted RBP9.95□□□□□ -0.82
RTN3-202ENST00000339997 IDI1Q13907 227 aa9.95□□□□□ -0.82
RTN3-202ENST00000339997 KRBA2Q6ZNG9 492 aa9.95□□□□□ -0.82
RTN3-202ENST00000339997 KLHDC4Q8TBB5 520 aa9.95□□□□□ -0.82
RTN3-202ENST00000339997 PSMB7Q99436 277 aa9.95□□□□□ -0.82
RTN3-202ENST00000339997 IGHMBP2P38935 993 aaKnown RBP9.95□□□□□ -0.82
RTN3-202ENST00000339997 LRMPQ12912 555 aa9.95□□□□□ -0.82
RTN3-202ENST00000339997 IQCA1Q86XH1 822 aa9.95□□□□□ -0.82
RTN3-202ENST00000339997 NCOA5Q9HCD5 579 aaKnown RBP9.95□□□□□ -0.82
RTN3-202ENST00000339997 RGS22Q8NE09 1264 aa9.95□□□□□ -0.82
RTN3-202ENST00000339997 CCDC171Q6TFL3 1326 aa9.95□□□□□ -0.82
RTN3-202ENST00000339997 EVCP57679 992 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 CCDC129Q6ZRS4 1044 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 MRPL50Q8N5N7 158 aaKnown RBP9.94□□□□□ -0.82
RTN3-202ENST00000339997 SCLT1Q96NL6 688 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 CARD6Q9BX69 1037 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 G2E3Q7L622 706 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 CCDC150Q8NCX0 1101 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 HELBQ8NG08 1087 aaPredicted RBP9.94□□□□□ -0.82
RTN3-202ENST00000339997 VAMP4O75379 141 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 HMGB1P09429 215 aaKnown RBP9.94□□□□□ -0.82
RTN3-202ENST00000339997 CCT6AP40227 531 aaKnown RBP9.94□□□□□ -0.82
RTN3-202ENST00000339997 NCKAP5LQ9HCH0 1330 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 MAP3K12Q12852 859 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 CEP85Q6P2H3 762 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 KSR1Q8IVT5 923 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 OSCARQ8IYS5 282 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 ZKSCAN3Q9BRR0 538 aa9.94□□□□□ -0.82
RTN3-202ENST00000339997 CCDC196A0A1B0GTZ2 297 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 PPM1FP49593 454 aaPredicted RBP9.93□□□□□ -0.82
RTN3-202ENST00000339997 ANKRD18AQ8IVF6 992 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 TXLNBQ8N3L3 684 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 UIMC1Q96RL1 719 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 SEC63Q9UGP8 760 aaKnown RBP9.93□□□□□ -0.82
RTN3-202ENST00000339997 JAG2Q9Y219 1238 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 SPTLC2O15270 562 aa9.93□□□□□ -0.82
RTN3-202ENST00000339997 NF2P35240 595 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms