RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 OS9Q13438 667 aaPredicted RBP34.02■■■■□ 3.04
CTDNEP1-201ENST00000318988 NLRP3Q96P20 1036 aa34.02■■■■□ 3.04
CTDNEP1-201ENST00000318988 EXOC6BQ9Y2D4 811 aa34.01■■■■□ 3.04
CTDNEP1-201ENST00000318988 ABCC12Q96J65 1359 aa34■■■■□ 3.03
CTDNEP1-201ENST00000318988 FAM161AQ3B820 660 aa34■■■■□ 3.03
CTDNEP1-201ENST00000318988 TAF7LQ5H9L4 462 aa34■■■■□ 3.03
CTDNEP1-201ENST00000318988 PRR5LQ6MZQ0 368 aa34■■■■□ 3.03
CTDNEP1-201ENST00000318988 ANKRD45Q5TZF3 282 aa33.99■■■■□ 3.03
CTDNEP1-201ENST00000318988 G3BP1Q13283 466 aaKnown RBP eCLIP33.99■■■■□ 3.03
CTDNEP1-201ENST00000318988 CCDC24Q8N4L8 307 aa33.99■■■■□ 3.03
CTDNEP1-201ENST00000318988 GREM2Q9H772 168 aa33.99■■■■□ 3.03
CTDNEP1-201ENST00000318988 PA2G4Q9UQ80 394 aaKnown RBP33.99■■■■□ 3.03
CTDNEP1-201ENST00000318988 ANKRD18BA2A2Z9 1011 aa33.98■■■■□ 3.03
CTDNEP1-201ENST00000318988 APBB1O00213 710 aa33.98■■■■□ 3.03
CTDNEP1-201ENST00000318988 RAB11FIP3O75154 756 aa33.98■■■■□ 3.03
CTDNEP1-201ENST00000318988 COPRSQ9NQ92 184 aa33.98■■■■□ 3.03
CTDNEP1-201ENST00000318988 NOP58Q9Y2X3 529 aaKnown RBP33.98■■■■□ 3.03
CTDNEP1-201ENST00000318988 ITGA6P23229 1130 aa33.97■■■■□ 3.03
CTDNEP1-201ENST00000318988 RFX5P48382 616 aaPredicted RBP33.97■■■■□ 3.03
CTDNEP1-201ENST00000318988 R3HDM1Q15032 1099 aaKnown RBP33.97■■■■□ 3.03
CTDNEP1-201ENST00000318988 PDGFDQ9GZP0 370 aaPredicted RBP33.97■■■■□ 3.03
CTDNEP1-201ENST00000318988 PDZRN3Q9UPQ7 1066 aa33.97■■■■□ 3.03
CTDNEP1-201ENST00000318988 LAMB2P55268 1798 aa33.96■■■■□ 3.03
CTDNEP1-201ENST00000318988 PTPN12Q05209 780 aaKnown RBP33.96■■■■□ 3.03
CTDNEP1-201ENST00000318988 NUCB1Q02818 461 aa33.95■■■■□ 3.03
CTDNEP1-201ENST00000318988 SF3B3Q15393 1217 aaKnown RBP33.95■■■■□ 3.03
CTDNEP1-201ENST00000318988 ERC1Q8IUD2 1116 aa33.95■■■■□ 3.03
CTDNEP1-201ENST00000318988 KLHDC4Q8TBB5 520 aa33.95■■■■□ 3.03
CTDNEP1-201ENST00000318988 SIL1Q9H173 461 aa33.95■■■■□ 3.03
CTDNEP1-201ENST00000318988 DDX60Q8IY21 1712 aaKnown RBP33.95■■■■□ 3.03
CTDNEP1-201ENST00000318988 MYH3P11055 1940 aa33.95■■■■□ 3.02
CTDNEP1-201ENST00000318988 LRRCC1Q9C099 1032 aa33.94■■■■□ 3.02
CTDNEP1-201ENST00000318988 CHD1LQ86WJ1 897 aa33.93■■■■□ 3.02
CTDNEP1-201ENST00000318988 RTL9Q8NET4 1388 aa33.92■■■■□ 3.02
CTDNEP1-201ENST00000318988 KIF1BPQ96EK5 621 aa33.91■■■■□ 3.02
CTDNEP1-201ENST00000318988 ZNF594Q96JF6 807 aaPredicted RBP33.91■■■■□ 3.02
CTDNEP1-201ENST00000318988 RIC1Q4ADV7 1423 aa33.91■■■■□ 3.02
CTDNEP1-201ENST00000318988 C3orf67Q6ZVT6 689 aa33.9■■■■□ 3.02
CTDNEP1-201ENST00000318988 LNPKQ9C0E8 428 aa33.9■■■■□ 3.02
CTDNEP1-201ENST00000318988 BCL11AQ9H165 835 aa33.9■■■■□ 3.02
CTDNEP1-201ENST00000318988 CDC5LQ99459 802 aaKnown RBP33.89■■■■□ 3.02
CTDNEP1-201ENST00000318988 FBXO3Q9UK99 471 aa33.89■■■■□ 3.02
CTDNEP1-201ENST00000318988 RHPN1Q8TCX5 695 aa33.88■■■■□ 3.01
CTDNEP1-201ENST00000318988 BRIP1Q9BX63 1249 aa33.88■■■■□ 3.01
CTDNEP1-201ENST00000318988 EYA2O00167 538 aa33.87■■■■□ 3.01
CTDNEP1-201ENST00000318988 IGHMBP2P38935 993 aaKnown RBP33.87■■■■□ 3.01
CTDNEP1-201ENST00000318988 LDHAL6AQ6ZMR3 332 aa33.87■■■■□ 3.01
CTDNEP1-201ENST00000318988 DDX46Q7L014 1031 aaKnown RBP33.87■■■■□ 3.01
CTDNEP1-201ENST00000318988 SEC31BQ9NQW1 1179 aa33.87■■■■□ 3.01
CTDNEP1-201ENST00000318988 CIAO1O76071 339 aa33.86■■■■□ 3.01
CTDNEP1-201ENST00000318988 ZBTB7AO95365 584 aa33.86■■■■□ 3.01
CTDNEP1-201ENST00000318988 RPGRQ92834 1020 aaKnown RBP33.86■■■■□ 3.01
CTDNEP1-201ENST00000318988 MPHOSPH8Q99549 860 aa33.86■■■■□ 3.01
CTDNEP1-201ENST00000318988 MTFR1LQ9H019 292 aa33.86■■■■□ 3.01
CTDNEP1-201ENST00000318988 CNNM1Q9NRU3 951 aa33.86■■■■□ 3.01
CTDNEP1-201ENST00000318988 PSDA5PKW4 1024 aaPredicted RBP33.85■■■■□ 3.01
CTDNEP1-201ENST00000318988 SMARCA5O60264 1052 aaPredicted RBP33.85■■■■□ 3.01
CTDNEP1-201ENST00000318988 IL15P40933 162 aaPredicted RBP33.85■■■■□ 3.01
CTDNEP1-201ENST00000318988 POLD1P28340 1107 aa33.84■■■■□ 3.01
CTDNEP1-201ENST00000318988 PDE6BP35913 854 aa33.84■■■■□ 3.01
CTDNEP1-201ENST00000318988 ANKRD18AQ8IVF6 992 aa33.84■■■■□ 3.01
CTDNEP1-201ENST00000318988 NRXN2Q9P2S2 1712 aa33.83■■■■□ 3.01
CTDNEP1-201ENST00000318988 RGS3P49796 1198 aa33.82■■■■□ 3
CTDNEP1-201ENST00000318988 LRRC24Q50LG9 513 aa33.82■■■■□ 3
CTDNEP1-201ENST00000318988 IL1RAPL2Q9NP60 686 aa33.82■■■■□ 3
CTDNEP1-201ENST00000318988 CLASRPQ8N2M8 674 aaKnown RBP33.81■■■■□ 3
CTDNEP1-201ENST00000318988 RBM17Q96I25 401 aaKnown RBP33.81■■■■□ 3
CTDNEP1-201ENST00000318988 PUS3Q9BZE2 481 aaKnown RBP33.81■■■■□ 3
CTDNEP1-201ENST00000318988 ATF5Q9Y2D1 282 aaPredicted RBP33.81■■■■□ 3
CTDNEP1-201ENST00000318988 SASH1O94885 1247 aa33.8■■■■□ 3
CTDNEP1-201ENST00000318988 CRY2Q49AN0 593 aa33.8■■■■□ 3
CTDNEP1-201ENST00000318988 ATG9AQ7Z3C6 839 aa33.8■■■■□ 3
CTDNEP1-201ENST00000318988 TNRC6CQ9HCJ0 1690 aaKnown RBP33.8■■■■□ 3
CTDNEP1-201ENST00000318988 SKAP1Q86WV1 359 aa33.79■■■■□ 3
CTDNEP1-201ENST00000318988 CEP126Q9P2H0 1117 aa33.79■■■■□ 3
CTDNEP1-201ENST00000318988 CASZ1Q86V15 1759 aa33.79■■■■□ 3
CTDNEP1-201ENST00000318988 KLRG2A4D1S0 409 aaPredicted RBP33.79■■■■□ 3
CTDNEP1-201ENST00000318988 TFCP2Q12800 502 aa33.78■■■■□ 3
CTDNEP1-201ENST00000318988 RPS8P62241 208 aaKnown RBP33.77■■■■□ 3
CTDNEP1-201ENST00000318988 METTL24Q5JXM2 366 aa33.77■■■■□ 3
CTDNEP1-201ENST00000318988 RIPOR2Q9Y4F9 1068 aa33.77■■■■□ 3
CTDNEP1-201ENST00000318988 PELP1Q8IZL8 1130 aaKnown RBP33.76■■■■□ 3
CTDNEP1-201ENST00000318988 PDE4AP27815 886 aa33.75■■■□□ 2.99
CTDNEP1-201ENST00000318988 GRAPQ13588 217 aa33.75■■■□□ 2.99
CTDNEP1-201ENST00000318988 GRAPLQ8TC17 118 aaPredicted RBP33.75■■■□□ 2.99
CTDNEP1-201ENST00000318988 CELF1Q92879 486 aaKnown RBP33.75■■■□□ 2.99
CTDNEP1-201ENST00000318988 MROH5Q6ZUA9 1318 aa33.75■■■□□ 2.99
CTDNEP1-201ENST00000318988 BSDC1Q9NW68 430 aaPredicted RBP33.74■■■□□ 2.99
CTDNEP1-201ENST00000318988 IFIT2P09913 472 aaKnown RBP33.74■■■□□ 2.99
CTDNEP1-201ENST00000318988 C16orf71Q8IYS4 520 aaPredicted RBP33.74■■■□□ 2.99
CTDNEP1-201ENST00000318988 H0YIN7 160 aa33.73■■■□□ 2.99
CTDNEP1-201ENST00000318988 NPR1P16066 1061 aa33.73■■■□□ 2.99
CTDNEP1-201ENST00000318988 HOXA10P31260 410 aaPredicted RBP33.73■■■□□ 2.99
CTDNEP1-201ENST00000318988 AACSQ86V21 672 aa33.73■■■□□ 2.99
CTDNEP1-201ENST00000318988 AKAP2Q9Y2D5 859 aa33.73■■■□□ 2.99
CTDNEP1-201ENST00000318988 C2CD5Q86YS7 1000 aa33.72■■■□□ 2.99
CTDNEP1-201ENST00000318988 CRAMP1Q96RY5 1269 aa33.72■■■□□ 2.99
CTDNEP1-201ENST00000318988 SRGNP10124 158 aa33.71■■■□□ 2.99
CTDNEP1-201ENST00000318988 TNNI3KQ59H18 835 aa33.7■■■□□ 2.99
CTDNEP1-201ENST00000318988 MASTLQ96GX5 879 aa33.7■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms