RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 SALL3Q9BXA9 1300 aa19.16■□□□□ 0.66
USH1C-202ENST00000318024 ONECUT3O60422 494 aaPredicted RBP19.15■□□□□ 0.66
USH1C-202ENST00000318024 CASP7P55210 303 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 RBM10P98175 930 aaKnown RBP19.15■□□□□ 0.66
USH1C-202ENST00000318024 TMX3Q96JJ7 454 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 SIL1Q9H173 461 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 CCDC87Q9NVE4 849 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 MAP3K15Q6ZN16 1313 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 MBD3O95983 291 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 IL6STP40189 918 aaPredicted RBP19.15■□□□□ 0.66
USH1C-202ENST00000318024 CSPP1Q1MSJ5 1256 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 DZIP3Q86Y13 1208 aaKnown RBP19.15■□□□□ 0.66
USH1C-202ENST00000318024 CCDC191Q8NCU4 936 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 RHPN1Q8TCX5 695 aa19.15■□□□□ 0.66
USH1C-202ENST00000318024 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.14■□□□□ 0.66
USH1C-202ENST00000318024 H7C1W4 665 aa19.14■□□□□ 0.65
USH1C-202ENST00000318024 CCDC39Q9UFE4 941 aa19.14■□□□□ 0.65
USH1C-202ENST00000318024 UQCRHLA0A096LP55 91 aa19.13■□□□□ 0.65
USH1C-202ENST00000318024 UQCRHP07919 91 aa19.13■□□□□ 0.65
USH1C-202ENST00000318024 NUTM1Q86Y26 1132 aa19.13■□□□□ 0.65
USH1C-202ENST00000318024 PDE1AP54750 535 aa19.13■□□□□ 0.65
USH1C-202ENST00000318024 GIGYF2Q6Y7W6 1299 aaKnown RBP19.13■□□□□ 0.65
USH1C-202ENST00000318024 SMIM5Q71RC9 77 aa19.13■□□□□ 0.65
USH1C-202ENST00000318024 ISCA1Q9BUE6 129 aa19.13■□□□□ 0.65
USH1C-202ENST00000318024 CHMP3Q9Y3E7 222 aa19.13■□□□□ 0.65
USH1C-202ENST00000318024 THSD7AQ9UPZ6 1657 aa19.12■□□□□ 0.65
USH1C-202ENST00000318024 RAB11FIP3O75154 756 aa19.12■□□□□ 0.65
USH1C-202ENST00000318024 EIF5P55010 431 aaKnown RBP19.12■□□□□ 0.65
USH1C-202ENST00000318024 FAM89AQ96GI7 184 aa19.12■□□□□ 0.65
USH1C-202ENST00000318024 DYNC1I1O14576 645 aa19.12■□□□□ 0.65
USH1C-202ENST00000318024 LMBR1LQ6UX01 489 aa19.12■□□□□ 0.65
USH1C-202ENST00000318024 SYNE4Q8N205 404 aa19.12■□□□□ 0.65
USH1C-202ENST00000318024 LINC00116Q8NCU8 138 aa19.12■□□□□ 0.65
USH1C-202ENST00000318024 TJP1Q07157 1748 aa19.11■□□□□ 0.65
USH1C-202ENST00000318024 MCM2P49736 904 aa19.11■□□□□ 0.65
USH1C-202ENST00000318024 KIF1BPQ96EK5 621 aa19.11■□□□□ 0.65
USH1C-202ENST00000318024 INTS4Q96HW7 963 aaKnown RBP19.1■□□□□ 0.65
USH1C-202ENST00000318024 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.1■□□□□ 0.65
USH1C-202ENST00000318024 AFDNP55196 1824 aaKnown RBP19.1■□□□□ 0.65
USH1C-202ENST00000318024 FOXO4P98177 505 aa19.1■□□□□ 0.65
USH1C-202ENST00000318024 MX1P20591 662 aa19.09■□□□□ 0.65
USH1C-202ENST00000318024 NEK4P51957 841 aa19.09■□□□□ 0.65
USH1C-202ENST00000318024 NUP188Q5SRE5 1749 aa19.09■□□□□ 0.65
USH1C-202ENST00000318024 SASS6Q6UVJ0 657 aa19.09■□□□□ 0.65
USH1C-202ENST00000318024 FAM13BQ9NYF5 915 aa19.09■□□□□ 0.65
USH1C-202ENST00000318024 G3BP1Q13283 466 aaKnown RBP eCLIP19.09■□□□□ 0.65
USH1C-202ENST00000318024 HSP90AB4PQ58FF6 505 aa19.09■□□□□ 0.65
USH1C-202ENST00000318024 CCDC85AQ96PX6 553 aaPredicted RBP19.09■□□□□ 0.65
USH1C-202ENST00000318024 ESYT1Q9BSJ8 1104 aa19.09■□□□□ 0.65
USH1C-202ENST00000318024 RABL6Q3YEC7 729 aaPredicted RBP19.08■□□□□ 0.65
USH1C-202ENST00000318024 PRDM4Q9UKN5 801 aa19.08■□□□□ 0.65
USH1C-202ENST00000318024 PALD1Q9ULE6 856 aa19.08■□□□□ 0.65
USH1C-202ENST00000318024 FAM177BA6PVY3 158 aa19.08■□□□□ 0.64
USH1C-202ENST00000318024 SASH1O94885 1247 aa19.08■□□□□ 0.64
USH1C-202ENST00000318024 ANAPC15P60006 121 aa19.08■□□□□ 0.64
USH1C-202ENST00000318024 NLRP10Q86W26 655 aa19.08■□□□□ 0.64
USH1C-202ENST00000318024 PTPN12Q05209 780 aaKnown RBP19.07■□□□□ 0.64
USH1C-202ENST00000318024 TRIM28Q13263 835 aaKnown RBP19.07■□□□□ 0.64
USH1C-202ENST00000318024 RFX5P48382 616 aaPredicted RBP19.06■□□□□ 0.64
USH1C-202ENST00000318024 TSPY26PQ9H489 355 aa19.06■□□□□ 0.64
USH1C-202ENST00000318024 CCNL1Q9UK58 526 aaPredicted RBP19.06■□□□□ 0.64
USH1C-202ENST00000318024 ERVV-1B6SEH8 477 aa19.06■□□□□ 0.64
USH1C-202ENST00000318024 MTERF4Q7Z6M4 381 aaKnown RBP19.06■□□□□ 0.64
USH1C-202ENST00000318024 RNF214Q8ND24 703 aa19.06■□□□□ 0.64
USH1C-202ENST00000318024 TCHHQ07283 1943 aa19.06■□□□□ 0.64
USH1C-202ENST00000318024 HSP90AB3PQ58FF7 597 aa19.05■□□□□ 0.64
USH1C-202ENST00000318024 FOXD4L5Q5VV16 416 aaPredicted RBP19.05■□□□□ 0.64
USH1C-202ENST00000318024 ZBTB38Q8NAP3 1195 aaPredicted RBP19.05■□□□□ 0.64
USH1C-202ENST00000318024 FOXD4L4Q8WXT5 416 aaPredicted RBP19.05■□□□□ 0.64
USH1C-202ENST00000318024 UBN2Q6ZU65 1347 aa19.05■□□□□ 0.64
USH1C-202ENST00000318024 KRT27Q7Z3Y8 459 aa19.05■□□□□ 0.64
USH1C-202ENST00000318024 CLASRPQ8N2M8 674 aaKnown RBP19.05■□□□□ 0.64
USH1C-202ENST00000318024 TRMT112Q9UI30 125 aaKnown RBP19.05■□□□□ 0.64
USH1C-202ENST00000318024 MYH14Q7Z406 1995 aaKnown RBP19.04■□□□□ 0.64
USH1C-202ENST00000318024 CAMTA2O94983 1202 aa19.04■□□□□ 0.64
USH1C-202ENST00000318024 PCCAP05165 728 aaPredicted RBP19.04■□□□□ 0.64
USH1C-202ENST00000318024 ZNF594Q96JF6 807 aaPredicted RBP19.04■□□□□ 0.64
USH1C-202ENST00000318024 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.04■□□□□ 0.64
USH1C-202ENST00000318024 MAP4K4O95819 1239 aaPredicted RBP19.04■□□□□ 0.64
USH1C-202ENST00000318024 ERC1Q8IUD2 1116 aa19.04■□□□□ 0.64
USH1C-202ENST00000318024 CHMLP26374 656 aa19.03■□□□□ 0.64
USH1C-202ENST00000318024 AACSQ86V21 672 aa19.03■□□□□ 0.64
USH1C-202ENST00000318024 CCDC8Q9H0W5 538 aaPredicted RBP19.03■□□□□ 0.64
USH1C-202ENST00000318024 COPRSQ9NQ92 184 aa19.03■□□□□ 0.64
USH1C-202ENST00000318024 COL15A1P39059 1388 aa19.03■□□□□ 0.64
USH1C-202ENST00000318024 TRIM6-TRIM34B2RNG4 842 aa19.02■□□□□ 0.64
USH1C-202ENST00000318024 GADD45BO75293 160 aaPredicted RBP19.02■□□□□ 0.64
USH1C-202ENST00000318024 TRIM37O94972 964 aa19.02■□□□□ 0.64
USH1C-202ENST00000318024 ZNF34Q8IZ26 560 aa19.02■□□□□ 0.64
USH1C-202ENST00000318024 TMEM87AQ8NBN3 555 aa19.02■□□□□ 0.64
USH1C-202ENST00000318024 RILPL2Q969X0 211 aa19.02■□□□□ 0.64
USH1C-202ENST00000318024 STAP2Q9UGK3 403 aa19.02■□□□□ 0.64
USH1C-202ENST00000318024 UVSSAQ2YD98 709 aa19.02■□□□□ 0.64
USH1C-202ENST00000318024 EAF2Q96CJ1 260 aaPredicted RBP19.02■□□□□ 0.64
USH1C-202ENST00000318024 BCL11BQ9C0K0 894 aaPredicted RBP19.02■□□□□ 0.64
USH1C-202ENST00000318024 IFIT2P09913 472 aaKnown RBP19.01■□□□□ 0.63
USH1C-202ENST00000318024 SUSD4Q5VX71 490 aa19.01■□□□□ 0.63
USH1C-202ENST00000318024 ZNF772Q68DY9 489 aaPredicted RBP19.01■□□□□ 0.63
USH1C-202ENST00000318024 BTAF1O14981 1849 aa19.01■□□□□ 0.63
USH1C-202ENST00000318024 GNPATO15228 680 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms