RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 CTAGE5O15320 804 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 PNMA6AP0CW24 399 aaPredicted RBP7.82□□□□□ -1.16
ZNF540-201ENST00000316433 PRKAR2BP31323 418 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 MTX1Q13505 466 aa7.82□□□□□ -1.16
ZNF540-201ENST00000316433 CICQ96RK0 1608 aaPredicted RBP7.81□□□□□ -1.16
ZNF540-201ENST00000316433 RGPD8O14715 1765 aaPredicted RBP7.81□□□□□ -1.16
ZNF540-201ENST00000316433 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.81□□□□□ -1.16
ZNF540-201ENST00000316433 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.81□□□□□ -1.16
ZNF540-201ENST00000316433 METP08581 1390 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 TNRQ92752 1358 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 ANKRD33BA6NCL7 494 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 EIF3CLB5ME19 914 aaKnown RBP7.81□□□□□ -1.16
ZNF540-201ENST00000316433 ERC2O15083 957 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 RAB11FIP3O75154 756 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 KDM4AO75164 1064 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 IPO7O95373 1038 aaKnown RBP7.81□□□□□ -1.16
ZNF540-201ENST00000316433 CPP00450 1065 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 SCP2P22307 547 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 PKP1Q13835 747 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 AK7Q96M32 723 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 EIF3CQ99613 913 aaKnown RBP7.81□□□□□ -1.16
ZNF540-201ENST00000316433 KCND1Q9NSA2 647 aa7.81□□□□□ -1.16
ZNF540-201ENST00000316433 IVLP07476 585 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 H2AFXP16104 143 aaPredicted RBP7.8□□□□□ -1.16
ZNF540-201ENST00000316433 MTA1Q13330 715 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 POLA2Q14181 598 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 TMEM132EQ6IEE7 984 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 PAIP2Q9BPZ3 127 aaKnown RBP7.8□□□□□ -1.16
ZNF540-201ENST00000316433 TM6SF1Q9BZW5 370 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 NUCKS1Q9H1E3 243 aaKnown RBP7.8□□□□□ -1.16
ZNF540-201ENST00000316433 RPS6KL1Q9Y6S9 549 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 NUP188Q5SRE5 1749 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 SMC2O95347 1197 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 TPM1P09493 284 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 RBM5P52756 815 aaKnown RBP eCLIP7.8□□□□□ -1.16
ZNF540-201ENST00000316433 IRX1P78414 480 aaPredicted RBP7.8□□□□□ -1.16
ZNF540-201ENST00000316433 TTC19Q6DKK2 380 aaPredicted RBP7.8□□□□□ -1.16
ZNF540-201ENST00000316433 EXOC6BQ9Y2D4 811 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 ADAMTSL3P82987 1691 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 FAXDC2Q96IV6 333 aa7.8□□□□□ -1.16
ZNF540-201ENST00000316433 RRP7AQ9Y3A4 280 aaKnown RBP7.8□□□□□ -1.16
ZNF540-201ENST00000316433 ACTN2P35609 894 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 JAKMIP3Q5VZ66 844 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 CEP135Q66GS9 1140 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 TACO1Q9BSH4 297 aaKnown RBP7.79□□□□□ -1.16
ZNF540-201ENST00000316433 RBM42Q9BTD8 480 aaKnown RBP7.79□□□□□ -1.16
ZNF540-201ENST00000316433 ZSCAN16Q9H4T2 348 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-201ENST00000316433 PSD3Q9NYI0 1048 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 UTYO14607 1347 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 ERBB3P21860 1342 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 CORO7P57737 925 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 NAIF1Q69YI7 327 aaPredicted RBP7.79□□□□□ -1.16
ZNF540-201ENST00000316433 CC2D2BQ6DHV5 1058 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 ANKRD23Q86SG2 305 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 DNAAF4Q8WXU2 420 aa7.79□□□□□ -1.16
ZNF540-201ENST00000316433 ELP1O95163 1332 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 C5P01031 1676 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 C21orf2O43822 256 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 CLCN6P51797 869 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 SPC24Q8NBT2 197 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 MIEF2Q96C03 454 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 GGNBP2Q9H3C7 697 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 ZDHHC9Q9Y397 364 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.78□□□□□ -1.16
ZNF540-201ENST00000316433 COQ9O75208 318 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 GNAI3P08754 354 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 EXOC4Q96A65 974 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 COG3Q96JB2 828 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 UBXN6Q9BZV1 441 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 COL18A1P39060 1754 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 TTC41PQ6P2S7 1318 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 TJP1Q07157 1748 aa7.78□□□□□ -1.16
ZNF540-201ENST00000316433 KIF2AO00139 706 aaPredicted RBP7.77□□□□□ -1.16
ZNF540-201ENST00000316433 NEBLO76041 1014 aa7.77□□□□□ -1.16
ZNF540-201ENST00000316433 SLU7O95391 586 aaKnown RBP7.77□□□□□ -1.16
ZNF540-201ENST00000316433 TPD52L1Q16890 204 aaPredicted RBP7.77□□□□□ -1.16
ZNF540-201ENST00000316433 CCDC96Q2M329 555 aa7.77□□□□□ -1.16
ZNF540-201ENST00000316433 LEKR1Q6ZMV7 388 aa7.77□□□□□ -1.16
ZNF540-201ENST00000316433 REXO1L1PQ8IX06 675 aa7.77□□□□□ -1.16
ZNF540-201ENST00000316433 PHACTR3Q96KR7 559 aa7.77□□□□□ -1.16
ZNF540-201ENST00000316433 ETAA1Q9NY74 926 aa7.77□□□□□ -1.16
ZNF540-201ENST00000316433 CABP1Q9NZU7 370 aa7.77□□□□□ -1.16
ZNF540-201ENST00000316433 ROBO2Q9HCK4 1378 aa7.77□□□□□ -1.16
ZNF540-201ENST00000316433 GIGYF1O75420 1035 aaPredicted RBP7.77□□□□□ -1.17
ZNF540-201ENST00000316433 ZRANB2O95218 330 aaKnown RBP eCLIP7.77□□□□□ -1.17
ZNF540-201ENST00000316433 HCLS1P14317 486 aaPredicted RBP7.77□□□□□ -1.17
ZNF540-201ENST00000316433 ERCC3P19447 782 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 PTGS1P23219 599 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 OAS2P29728 719 aaKnown RBP7.77□□□□□ -1.17
ZNF540-201ENST00000316433 MNAT1P51948 309 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 ZRSR1Q15695 479 aaKnown RBP7.77□□□□□ -1.17
ZNF540-201ENST00000316433 RBM43Q6ZSC3 357 aaKnown RBP7.77□□□□□ -1.17
ZNF540-201ENST00000316433 SSH3Q8TE77 659 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 LAMA4Q16363 1823 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 PRR36Q9H6K5 1346 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 CAND2O75155 1236 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 CAVIN2O95810 425 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 SDSP20132 328 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 LMAN1P49257 510 aa7.77□□□□□ -1.17
ZNF540-201ENST00000316433 CCT2P78371 535 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms