RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 CACNA1FO60840 1977 aa15.33■□□□□ 0.04
SCFD1-201ENST00000311943 ALDH1B1P30837 517 aa15.33■□□□□ 0.04
SCFD1-201ENST00000311943 SF3B3Q15393 1217 aaKnown RBP15.33■□□□□ 0.04
SCFD1-201ENST00000311943 FRAT1Q92837 279 aaPredicted RBP15.33■□□□□ 0.04
SCFD1-201ENST00000311943 KAZALD1Q96I82 304 aa15.33■□□□□ 0.04
SCFD1-201ENST00000311943 CRAMP1Q96RY5 1269 aa15.33■□□□□ 0.04
SCFD1-201ENST00000311943 TTLL11Q8NHH1 800 aa15.32■□□□□ 0.04
SCFD1-201ENST00000311943 CLUAP1Q96AJ1 413 aa15.32■□□□□ 0.04
SCFD1-201ENST00000311943 CHMP4AQ9BY43 222 aa15.32■□□□□ 0.04
SCFD1-201ENST00000311943 PDE8AO60658 829 aa15.31■□□□□ 0.04
SCFD1-201ENST00000311943 ALDH1L2Q3SY69 923 aa15.31■□□□□ 0.04
SCFD1-201ENST00000311943 DDX46Q7L014 1031 aaKnown RBP15.31■□□□□ 0.04
SCFD1-201ENST00000311943 FOXO4P98177 505 aa15.31■□□□□ 0.04
SCFD1-201ENST00000311943 GRAPQ13588 217 aa15.31■□□□□ 0.04
SCFD1-201ENST00000311943 GRAPLQ8TC17 118 aaPredicted RBP15.31■□□□□ 0.04
SCFD1-201ENST00000311943 SUCLG2Q96I99 432 aa15.31■□□□□ 0.04
SCFD1-201ENST00000311943 TAOK3Q9H2K8 898 aa15.31■□□□□ 0.04
SCFD1-201ENST00000311943 RNF123Q5XPI4 1314 aa15.3■□□□□ 0.04
SCFD1-201ENST00000311943 CTSWP56202 376 aa15.3■□□□□ 0.04
SCFD1-201ENST00000311943 FAM161AQ3B820 660 aa15.3■□□□□ 0.04
SCFD1-201ENST00000311943 CCDC93Q567U6 631 aa15.3■□□□□ 0.04
SCFD1-201ENST00000311943 SRCIN1Q9C0H9 1055 aa15.3■□□□□ 0.04
SCFD1-201ENST00000311943 PDZRN3Q9UPQ7 1066 aa15.3■□□□□ 0.04
SCFD1-201ENST00000311943 SNAP23O00161 211 aa15.29■□□□□ 0.04
SCFD1-201ENST00000311943 GRM8O00222 908 aa15.29■□□□□ 0.04
SCFD1-201ENST00000311943 LMNB1P20700 586 aa15.29■□□□□ 0.04
SCFD1-201ENST00000311943 ZNF594Q96JF6 807 aaPredicted RBP15.29■□□□□ 0.04
SCFD1-201ENST00000311943 NMRK2Q9NPI5 230 aa15.29■□□□□ 0.04
SCFD1-201ENST00000311943 ATP6V0A2Q9Y487 856 aa15.29■□□□□ 0.04
SCFD1-201ENST00000311943 CDHR2Q9BYE9 1310 aa15.29■□□□□ 0.04
SCFD1-201ENST00000311943 GPSM2P81274 684 aa15.28■□□□□ 0.04
SCFD1-201ENST00000311943 USP44Q9H0E7 712 aa15.28■□□□□ 0.04
SCFD1-201ENST00000311943 SPEF2Q9C093 1822 aa15.28■□□□□ 0.04
SCFD1-201ENST00000311943 TRIM27P14373 513 aa15.27■□□□□ 0.04
SCFD1-201ENST00000311943 RPS8P62241 208 aaKnown RBP15.27■□□□□ 0.04
SCFD1-201ENST00000311943 C9orf78Q9NZ63 289 aaPredicted RBP15.27■□□□□ 0.04
SCFD1-201ENST00000311943 PTPRCP08575 1304 aa15.27■□□□□ 0.04
SCFD1-201ENST00000311943 DUOX1Q9NRD9 1551 aa15.27■□□□□ 0.04
SCFD1-201ENST00000311943 FKBP4Q02790 459 aaKnown RBP eCLIP15.27■□□□□ 0.03
SCFD1-201ENST00000311943 AOC3Q16853 763 aa15.27■□□□□ 0.03
SCFD1-201ENST00000311943 LMBR1LQ6UX01 489 aa15.27■□□□□ 0.03
SCFD1-201ENST00000311943 NSFL1CQ9UNZ2 370 aaKnown RBP15.27■□□□□ 0.03
SCFD1-201ENST00000311943 CHMP3Q9Y3E7 222 aa15.27■□□□□ 0.03
SCFD1-201ENST00000311943 PLIN1O60240 522 aa15.26■□□□□ 0.03
SCFD1-201ENST00000311943 RLBP1P12271 317 aa15.26■□□□□ 0.03
SCFD1-201ENST00000311943 ITGA6P23229 1130 aa15.26■□□□□ 0.03
SCFD1-201ENST00000311943 POLLQ9UGP5 575 aa15.26■□□□□ 0.03
SCFD1-201ENST00000311943 DDNO94850 711 aaPredicted RBP15.26■□□□□ 0.03
SCFD1-201ENST00000311943 KLHDC4Q8TBB5 520 aa15.26■□□□□ 0.03
SCFD1-201ENST00000311943 ZNF541Q9H0D2 1346 aa15.26■□□□□ 0.03
SCFD1-201ENST00000311943 TIAM2Q8IVF5 1701 aa15.26■□□□□ 0.03
SCFD1-201ENST00000311943 RIMBP2O15034 1052 aa15.25■□□□□ 0.03
SCFD1-201ENST00000311943 BBOX1O75936 387 aa15.25■□□□□ 0.03
SCFD1-201ENST00000311943 CSF1RP07333 972 aa15.25■□□□□ 0.03
SCFD1-201ENST00000311943 CCDC152Q4G0S7 254 aa15.25■□□□□ 0.03
SCFD1-201ENST00000311943 SP8Q8IXZ3 490 aa15.25■□□□□ 0.03
SCFD1-201ENST00000311943 MEIS3Q99687 375 aa15.25■□□□□ 0.03
SCFD1-201ENST00000311943 BICC1Q9H694 974 aaKnown RBP15.25■□□□□ 0.03
SCFD1-201ENST00000311943 KCNQ5Q9NR82 932 aa15.25■□□□□ 0.03
SCFD1-201ENST00000311943 ALDH1L1O75891 902 aa15.24■□□□□ 0.03
SCFD1-201ENST00000311943 CT47B1P0C2W7 299 aaPredicted RBP15.24■□□□□ 0.03
SCFD1-201ENST00000311943 IARSP41252 1262 aaKnown RBP15.24■□□□□ 0.03
SCFD1-201ENST00000311943 HELBQ8NG08 1087 aaPredicted RBP15.24■□□□□ 0.03
SCFD1-201ENST00000311943 MYH3P11055 1940 aa15.24■□□□□ 0.03
SCFD1-201ENST00000311943 DPP8Q6V1X1 898 aaPredicted RBP15.24■□□□□ 0.03
SCFD1-201ENST00000311943 RTKN2Q8IZC4 609 aa15.24■□□□□ 0.03
SCFD1-201ENST00000311943 MPNDQ8N594 471 aa15.24■□□□□ 0.03
SCFD1-201ENST00000311943 ANKRD44Q8N8A2 993 aa15.24■□□□□ 0.03
SCFD1-201ENST00000311943 LTBP3Q9NS15 1303 aa15.23■□□□□ 0.03
SCFD1-201ENST00000311943 POTECB2RU33 542 aa15.23■□□□□ 0.03
SCFD1-201ENST00000311943 KLRK1P26718 216 aa15.23■□□□□ 0.03
SCFD1-201ENST00000311943 BRPF1P55201 1214 aaPredicted RBP15.23■□□□□ 0.03
SCFD1-201ENST00000311943 PLA2G12BQ9BX93 195 aa15.23■□□□□ 0.03
SCFD1-201ENST00000311943 PUS3Q9BZE2 481 aaKnown RBP15.23■□□□□ 0.03
SCFD1-201ENST00000311943 RRAGCQ9HB90 399 aa15.23■□□□□ 0.03
SCFD1-201ENST00000311943 GPBP1L1Q9HC44 474 aaPredicted RBP15.23■□□□□ 0.03
SCFD1-201ENST00000311943 ANKRD18AQ8IVF6 992 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 TMEM57Q8N5G2 664 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 LRRC37AA6NMS7 1700 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 KIF3CO14782 793 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 PPIP5K2O43314 1243 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 TAF5LO75529 589 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 DOK7Q18PE1 504 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 ATF7IPQ6VMQ6 1270 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 TXNRD3Q86VQ6 643 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 PSMD1Q99460 953 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 MINPP1Q9UNW1 487 aa15.22■□□□□ 0.03
SCFD1-201ENST00000311943 UTYO14607 1347 aa15.21■□□□□ 0.03
SCFD1-201ENST00000311943 LARGE2Q8N3Y3 721 aa15.21■□□□□ 0.03
SCFD1-201ENST00000311943 LTBP1Q14766 1721 aa15.21■□□□□ 0.03
SCFD1-201ENST00000311943 C6orf229H3BNL8 230 aa15.21■□□□□ 0.02
SCFD1-201ENST00000311943 POTEIP0CG38 1075 aa15.21■□□□□ 0.02
SCFD1-201ENST00000311943 POTEJP0CG39 1038 aa15.21■□□□□ 0.02
SCFD1-201ENST00000311943 SOGA3Q5TF21 947 aa15.21■□□□□ 0.02
SCFD1-201ENST00000311943 TBC1D16Q8TBP0 767 aa15.21■□□□□ 0.02
SCFD1-201ENST00000311943 PANK1Q8TE04 598 aa15.21■□□□□ 0.02
SCFD1-201ENST00000311943 DBNDD1Q9H9R9 158 aa15.21■□□□□ 0.02
SCFD1-201ENST00000311943 DICER1Q9UPY3 1922 aaKnown RBP15.2■□□□□ 0.02
SCFD1-201ENST00000311943 YDJCA8MPS7 323 aa15.2■□□□□ 0.02
SCFD1-201ENST00000311943 C20orf194Q5TEA3 1177 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms