RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 KIAA1211Q6ZU35 1233 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 CCDC85AQ96PX6 553 aaPredicted RBP7.92□□□□□ -1.14
USP47-201ENST00000305481 GPR108Q9NPR9 543 aa7.92□□□□□ -1.14
USP47-201ENST00000305481 CYP2E1P05181 493 aaPredicted RBP7.91□□□□□ -1.14
USP47-201ENST00000305481 NECTIN1Q15223 517 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 DZIP3Q86Y13 1208 aaKnown RBP7.91□□□□□ -1.14
USP47-201ENST00000305481 KCNB2Q92953 911 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 HAUS7Q99871 368 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 FSD1Q9BTV5 496 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 NUP98P52948 1817 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 CCDC171Q6TFL3 1326 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 UBN2Q6ZU65 1347 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 CDHR2Q9BYE9 1310 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 LOC102724428A0A0B4J2F2 783 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 SIK1P57059 783 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 FAM98CQ17RN3 349 aaKnown RBP7.91□□□□□ -1.14
USP47-201ENST00000305481 MED23Q9ULK4 1368 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 ERVV-1B6SEH8 477 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 HIP1O00291 1037 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 ATP6V1AP38606 617 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 CRKLP46109 303 aaKnown RBP7.91□□□□□ -1.14
USP47-201ENST00000305481 CUL4AQ13619 759 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 ZNF589Q86UQ0 364 aaPredicted RBP7.91□□□□□ -1.14
USP47-201ENST00000305481 MAP4K1Q92918 833 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 TTC14Q96N46 770 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 NEUROD6Q96NK8 337 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 ANKRD36CQ5JPF3 1778 aa7.91□□□□□ -1.14
USP47-201ENST00000305481 ZNF609O15014 1411 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 A0A0G2JS52 829 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 MCM2P49736 904 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 CCDC57Q2TAC2 916 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 ADCK5Q3MIX3 580 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 NOL8Q76FK4 1167 aaKnown RBP7.9□□□□□ -1.14
USP47-201ENST00000305481 ZNF34Q8IZ26 560 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 TTLL11Q8NHH1 800 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 C8orf37Q96NL8 207 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 ZDHHC9Q9Y397 364 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 A0A1B0GUL7 405 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 CPA1P15085 419 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 COL9A3Q14050 684 aaPredicted RBP7.9□□□□□ -1.14
USP47-201ENST00000305481 HSP90AB3PQ58FF7 597 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 PRPF40BQ6NWY9 871 aaKnown RBP7.9□□□□□ -1.14
USP47-201ENST00000305481 CLEC17AQ6ZS10 378 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 DNAJC2Q99543 621 aaKnown RBP7.9□□□□□ -1.14
USP47-201ENST00000305481 CWC22Q9HCG8 908 aaKnown RBP7.9□□□□□ -1.14
USP47-201ENST00000305481 CCDC87Q9NVE4 849 aa7.9□□□□□ -1.14
USP47-201ENST00000305481 MYH14Q7Z406 1995 aaKnown RBP7.9□□□□□ -1.14
USP47-201ENST00000305481 JCADQ9P266 1359 aa7.9□□□□□ -1.15
USP47-201ENST00000305481 RREB1Q92766 1687 aa7.9□□□□□ -1.15
USP47-201ENST00000305481 VPS72Q15906 364 aa7.9□□□□□ -1.15
USP47-201ENST00000305481 DDX46Q7L014 1031 aaKnown RBP7.9□□□□□ -1.15
USP47-201ENST00000305481 NGLY1Q96IV0 654 aa7.9□□□□□ -1.15
USP47-201ENST00000305481 GREM2Q9H772 168 aa7.9□□□□□ -1.15
USP47-201ENST00000305481 RBM8AQ9Y5S9 174 aaKnown RBP7.9□□□□□ -1.15
USP47-201ENST00000305481 PALLDQ8WX93 1383 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 IRS4O14654 1257 aaPredicted RBP7.89□□□□□ -1.15
USP47-201ENST00000305481 PTF1AQ7RTS3 328 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 TRMT112Q9UI30 125 aaKnown RBP7.89□□□□□ -1.15
USP47-201ENST00000305481 TAF6LQ9Y6J9 622 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 TAF5LO75529 589 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 CTSWP56202 376 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 SLFNL1Q499Z3 407 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 CREB3L3Q68CJ9 461 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 FNBP4Q8N3X1 1017 aaPredicted RBP7.89□□□□□ -1.15
USP47-201ENST00000305481 SEC62Q99442 399 aaKnown RBP7.89□□□□□ -1.15
USP47-201ENST00000305481 RIPOR2Q9Y4F9 1068 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 CICQ96RK0 1608 aaPredicted RBP7.89□□□□□ -1.15
USP47-201ENST00000305481 TRAK2O60296 914 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 ITGA6P23229 1130 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 ADORA1P30542 326 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 AK2P54819 239 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 IFIT5Q13325 482 aaKnown RBP7.89□□□□□ -1.15
USP47-201ENST00000305481 RUFY3Q7L099 469 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 LARP6Q9BRS8 491 aaKnown RBP7.89□□□□□ -1.15
USP47-201ENST00000305481 ZSWIM6Q9HCJ5 1215 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 CEP126Q9P2H0 1117 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 FBXO3Q9UK99 471 aa7.89□□□□□ -1.15
USP47-201ENST00000305481 CAMTA2O94983 1202 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 CASTP20810 708 aaKnown RBP7.88□□□□□ -1.15
USP47-201ENST00000305481 SUSD4Q5VX71 490 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 KBTBD3Q8NAB2 608 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 RFX7Q2KHR2 1363 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 RIC1Q4ADV7 1423 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 DDX11L8A8MPP1 907 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 GOLIM4O00461 696 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 SLC27A2O14975 620 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 NUCB2P80303 420 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 CCDC129Q6ZRS4 1044 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 INTS4Q96HW7 963 aaKnown RBP7.88□□□□□ -1.15
USP47-201ENST00000305481 GBP4Q96PP9 640 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 TM6SF1Q9BZW5 370 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 PAG1Q9NWQ8 432 aa7.88□□□□□ -1.15
USP47-201ENST00000305481 BAG4O95429 457 aaKnown RBP7.87□□□□□ -1.15
USP47-201ENST00000305481 USPL1Q5W0Q7 1092 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 IL27Q8NEV9 243 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 XAGE2Q96GT9 111 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 JAKMIP1Q96N16 626 aaKnown RBP7.87□□□□□ -1.15
USP47-201ENST00000305481 PDE8AO60658 829 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 KCNQ4P56696 695 aa7.87□□□□□ -1.15
USP47-201ENST00000305481 RPAP1Q9BWH6 1393 aaPredicted RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms