RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 SPAG1Q07617 926 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 TMEM132AQ24JP5 1023 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 MICU3Q86XE3 530 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 GOPCQ9HD26 462 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 RSPH14Q9UHP6 348 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 CFAP43Q8NDM7 1665 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 DNA2P51530 1060 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 GTF2A1P52655 376 aaPredicted RBP14.74□□□□□ -0.05
COL3A1-201ENST00000304636 PIP4K2BP78356 416 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 IDI1Q13907 227 aa14.74□□□□□ -0.05
COL3A1-201ENST00000304636 GOLGA6L10A0A0M3HER8 536 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 RANBP6O60518 1105 aaKnown RBP14.73□□□□□ -0.05
COL3A1-201ENST00000304636 MAATS1Q7Z4T9 603 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 ERO1AQ96HE7 468 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 TCEANC2Q96MN5 208 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 ITSN2Q9NZM3 1697 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 ZBTB7BO15156 539 aaPredicted RBP14.73□□□□□ -0.05
COL3A1-201ENST00000304636 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.73□□□□□ -0.05
COL3A1-201ENST00000304636 SLC26A6Q9BXS9 759 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 USP5P45974 858 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 HAND2P61296 217 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 ANKRD24Q8TF21 1146 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 COL17A1Q9UMD9 1497 aaPredicted RBP14.73□□□□□ -0.05
COL3A1-201ENST00000304636 CTAGE9A4FU28 777 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 BMP15O95972 392 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 SLC5A1P13866 664 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 CAPN2P17655 700 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 IBSPP21815 317 aaPredicted RBP14.73□□□□□ -0.05
COL3A1-201ENST00000304636 CYLC1P35663 651 aaPredicted RBP14.73□□□□□ -0.05
COL3A1-201ENST00000304636 MCMDC2Q4G0Z9 681 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 CCDC91Q7Z6B0 441 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 ZNF76P36508 570 aa14.73□□□□□ -0.05
COL3A1-201ENST00000304636 GIGYF2Q6Y7W6 1299 aaKnown RBP14.72□□□□□ -0.05
COL3A1-201ENST00000304636 RUFY3Q7L099 469 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 TAOK3Q9H2K8 898 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 TCP11L1Q9NUJ3 509 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 CAVIN4Q5BKX8 364 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 SYT10Q6XYQ8 523 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 LAMC3Q9Y6N6 1575 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 PPFIA3O75145 1194 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 ALDH1L1O75891 902 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 TUBBP07437 444 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 CCDC144CPQ8IYA2 1237 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 SPTLC2O15270 562 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 SPECC1LQ69YQ0 1117 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 BBXQ8WY36 941 aaPredicted RBP14.72□□□□□ -0.05
COL3A1-201ENST00000304636 ALG1Q9BT22 464 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 MKNK2Q9HBH9 465 aa14.72□□□□□ -0.05
COL3A1-201ENST00000304636 ZFYP08048 801 aaPredicted RBP14.71□□□□□ -0.05
COL3A1-201ENST00000304636 ANKRD18BA2A2Z9 1011 aa14.71□□□□□ -0.05
COL3A1-201ENST00000304636 OPA1O60313 960 aa14.71□□□□□ -0.05
COL3A1-201ENST00000304636 POTEJP0CG39 1038 aa14.71□□□□□ -0.05
COL3A1-201ENST00000304636 BLMP54132 1417 aaPredicted RBP14.71□□□□□ -0.05
COL3A1-201ENST00000304636 ATL3Q6DD88 541 aa14.71□□□□□ -0.05
COL3A1-201ENST00000304636 NPC1L1Q9UHC9 1359 aa14.71□□□□□ -0.05
COL3A1-201ENST00000304636 LMOD1P29536 600 aaPredicted RBP14.71□□□□□ -0.05
COL3A1-201ENST00000304636 NMIQ13287 307 aaPredicted RBP14.71□□□□□ -0.05
COL3A1-201ENST00000304636 IPO4Q8TEX9 1081 aaKnown RBP14.71□□□□□ -0.05
COL3A1-201ENST00000304636 DUOX2Q9NRD8 1548 aa14.71□□□□□ -0.05
COL3A1-201ENST00000304636 MFSD6Q6ZSS7 791 aa14.71□□□□□ -0.06
COL3A1-201ENST00000304636 CALML4Q96GE6 196 aa14.71□□□□□ -0.06
COL3A1-201ENST00000304636 LRRC2Q9BYS8 371 aa14.71□□□□□ -0.06
COL3A1-201ENST00000304636 UHRF1BP1Q6BDS2 1440 aa14.71□□□□□ -0.06
COL3A1-201ENST00000304636 MATR3P43243 847 aaKnown RBP eCLIP14.7□□□□□ -0.06
COL3A1-201ENST00000304636 CREB3L3Q68CJ9 461 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 DDX46Q7L014 1031 aaKnown RBP14.7□□□□□ -0.06
COL3A1-201ENST00000304636 TSPYL6Q8N831 410 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 ZFP91Q96JP5 570 aaPredicted RBP14.7□□□□□ -0.06
COL3A1-201ENST00000304636 TRIM21P19474 475 aaKnown RBP14.7□□□□□ -0.06
COL3A1-201ENST00000304636 UBA7P41226 1012 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 ZC3H6P61129 1189 aaKnown RBP14.7□□□□□ -0.06
COL3A1-201ENST00000304636 PRDM11Q9NQV5 511 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 IFNKQ9P0W0 207 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 ZMYM3Q14202 1370 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 RAD50Q92878 1312 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 RRAGBQ5VZM2 374 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 RAB11FIP4Q86YS3 637 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 TRIM47Q96LD4 638 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 TMCO5BA8MYB1 307 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 RIOK3O14730 519 aaKnown RBP14.7□□□□□ -0.06
COL3A1-201ENST00000304636 UBE3BQ7Z3V4 1068 aa14.7□□□□□ -0.06
COL3A1-201ENST00000304636 ZBTB43O43298 467 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 AKR1B10O60218 316 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 TICAM2Q86XR7 235 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 LMBRD1Q9NUN5 540 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 CWC25Q9NXE8 425 aaPredicted RBP14.69□□□□□ -0.06
COL3A1-201ENST00000304636 KIF5BP33176 963 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 GABPB1Q06547 395 aaPredicted RBP14.69□□□□□ -0.06
COL3A1-201ENST00000304636 IFI16Q16666 785 aaKnown RBP14.69□□□□□ -0.06
COL3A1-201ENST00000304636 CCDC40Q4G0X9 1142 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 ANKLE2Q86XL3 938 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 IGSF3O75054 1194 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 SSR1P43307 286 aaKnown RBP14.69□□□□□ -0.06
COL3A1-201ENST00000304636 NBPF11Q86T75 865 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 CARD14Q9BXL6 1004 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 GSTTP1A0A1W2PQM5 241 aa14.69□□□□□ -0.06
COL3A1-201ENST00000304636 PTCD1O75127 700 aaKnown RBP14.69□□□□□ -0.06
COL3A1-201ENST00000304636 SNRKQ9NRH2 765 aa14.68□□□□□ -0.06
COL3A1-201ENST00000304636 CHPF2Q9P2E5 772 aa14.68□□□□□ -0.06
COL3A1-201ENST00000304636 HSPA4P34932 840 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms