RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 MVPQ14764 893 aaKnown RBP30.76■■■□□ 2.51
HOXC9-201ENST00000303450 STYK1Q6J9G0 422 aa30.76■■■□□ 2.51
HOXC9-201ENST00000303450 PIM2Q9P1W9 311 aa30.76■■■□□ 2.51
HOXC9-201ENST00000303450 CCDC152Q4G0S7 254 aa30.75■■■□□ 2.51
HOXC9-201ENST00000303450 RBM17Q96I25 401 aaKnown RBP30.75■■■□□ 2.51
HOXC9-201ENST00000303450 DLEC1Q9Y238 1755 aa30.74■■■□□ 2.51
HOXC9-201ENST00000303450 CCDC85AQ96PX6 553 aaPredicted RBP30.74■■■□□ 2.51
HOXC9-201ENST00000303450 HOXA10P31260 410 aaPredicted RBP30.73■■■□□ 2.51
HOXC9-201ENST00000303450 DDX46Q7L014 1031 aaKnown RBP30.73■■■□□ 2.51
HOXC9-201ENST00000303450 TTLL11Q8NHH1 800 aa30.73■■■□□ 2.51
HOXC9-201ENST00000303450 CNKSR1Q969H4 720 aa30.73■■■□□ 2.51
HOXC9-201ENST00000303450 WWC3Q9ULE0 1092 aa30.73■■■□□ 2.51
HOXC9-201ENST00000303450 FOXO4P98177 505 aa30.73■■■□□ 2.51
HOXC9-201ENST00000303450 EPHA10Q5JZY3 1008 aa30.73■■■□□ 2.51
HOXC9-201ENST00000303450 DDX19BQ9UMR2 479 aa30.73■■■□□ 2.51
HOXC9-201ENST00000303450 ZBTB7BO15156 539 aaPredicted RBP30.72■■■□□ 2.51
HOXC9-201ENST00000303450 ALDH1B1P30837 517 aa30.72■■■□□ 2.51
HOXC9-201ENST00000303450 TTLL6Q8N841 843 aa30.72■■■□□ 2.51
HOXC9-201ENST00000303450 KAZALD1Q96I82 304 aa30.72■■■□□ 2.51
HOXC9-201ENST00000303450 BICC1Q9H694 974 aaKnown RBP30.71■■■□□ 2.51
HOXC9-201ENST00000303450 CSF1RP07333 972 aa30.7■■■□□ 2.51
HOXC9-201ENST00000303450 DALRD3Q5D0E6 543 aaKnown RBP30.7■■■□□ 2.51
HOXC9-201ENST00000303450 LMBR1LQ6UX01 489 aa30.7■■■□□ 2.51
HOXC9-201ENST00000303450 CRAMP1Q96RY5 1269 aa30.7■■■□□ 2.51
HOXC9-201ENST00000303450 CHMP3Q9Y3E7 222 aa30.7■■■□□ 2.51
HOXC9-201ENST00000303450 LRRFIP2Q9Y608 721 aaKnown RBP30.7■■■□□ 2.51
HOXC9-201ENST00000303450 BRCA1P38398 1863 aaKnown RBP30.69■■■□□ 2.5
HOXC9-201ENST00000303450 GNAI2P04899 355 aa30.68■■■□□ 2.5
HOXC9-201ENST00000303450 CHMP4BQ9H444 224 aaKnown RBP30.68■■■□□ 2.5
HOXC9-201ENST00000303450 GREM2Q9H772 168 aa30.68■■■□□ 2.5
HOXC9-201ENST00000303450 BCS1LQ9Y276 419 aa30.68■■■□□ 2.5
HOXC9-201ENST00000303450 FAM161AQ3B820 660 aa30.67■■■□□ 2.5
HOXC9-201ENST00000303450 PELP1Q8IZL8 1130 aaKnown RBP30.67■■■□□ 2.5
HOXC9-201ENST00000303450 SEC31BQ9NQW1 1179 aa30.67■■■□□ 2.5
HOXC9-201ENST00000303450 CACNA1SQ13698 1873 aa30.66■■■□□ 2.5
HOXC9-201ENST00000303450 GRAPQ13588 217 aa30.66■■■□□ 2.5
HOXC9-201ENST00000303450 RABL6Q3YEC7 729 aaPredicted RBP30.66■■■□□ 2.5
HOXC9-201ENST00000303450 PRPF40BQ6NWY9 871 aaKnown RBP30.66■■■□□ 2.5
HOXC9-201ENST00000303450 ANKRD44Q8N8A2 993 aa30.66■■■□□ 2.5
HOXC9-201ENST00000303450 GRAPLQ8TC17 118 aaPredicted RBP30.66■■■□□ 2.5
HOXC9-201ENST00000303450 RTL9Q8NET4 1388 aa30.65■■■□□ 2.5
HOXC9-201ENST00000303450 TAF1P21675 1872 aa30.64■■■□□ 2.5
HOXC9-201ENST00000303450 ITGA6P23229 1130 aa30.64■■■□□ 2.5
HOXC9-201ENST00000303450 IFIT5Q13325 482 aaKnown RBP30.63■■■□□ 2.49
HOXC9-201ENST00000303450 CCDC57Q2TAC2 916 aa30.63■■■□□ 2.49
HOXC9-201ENST00000303450 CDC5LQ99459 802 aaKnown RBP30.63■■■□□ 2.49
HOXC9-201ENST00000303450 SLX4Q8IY92 1834 aa30.63■■■□□ 2.49
HOXC9-201ENST00000303450 ANKRD18BA2A2Z9 1011 aa30.63■■■□□ 2.49
HOXC9-201ENST00000303450 BBOX1O75936 387 aa30.63■■■□□ 2.49
HOXC9-201ENST00000303450 CELF1Q92879 486 aaKnown RBP30.63■■■□□ 2.49
HOXC9-201ENST00000303450 RPS8P62241 208 aaKnown RBP30.62■■■□□ 2.49
HOXC9-201ENST00000303450 GPR162Q16538 588 aa30.62■■■□□ 2.49
HOXC9-201ENST00000303450 C1orf115Q9H7X2 142 aa30.62■■■□□ 2.49
HOXC9-201ENST00000303450 ZNF219Q9P2Y4 722 aaPredicted RBP30.62■■■□□ 2.49
HOXC9-201ENST00000303450 PPEF1O14829 653 aaPredicted RBP30.61■■■□□ 2.49
HOXC9-201ENST00000303450 ANKRD18AQ8IVF6 992 aa30.61■■■□□ 2.49
HOXC9-201ENST00000303450 ZBTB40Q9NUA8 1239 aa30.61■■■□□ 2.49
HOXC9-201ENST00000303450 CRBNQ96SW2 442 aa30.6■■■□□ 2.49
HOXC9-201ENST00000303450 GOLGB1Q14789 3259 aaKnown RBP30.59■■■□□ 2.49
HOXC9-201ENST00000303450 C21orf2O43822 256 aa30.58■■■□□ 2.49
HOXC9-201ENST00000303450 TAF7LQ5H9L4 462 aa30.58■■■□□ 2.49
HOXC9-201ENST00000303450 YBX3P16989 372 aaKnown RBP eCLIP30.57■■■□□ 2.49
HOXC9-201ENST00000303450 IGHMBP2P38935 993 aaKnown RBP30.57■■■□□ 2.49
HOXC9-201ENST00000303450 TMC4Q7Z404 712 aa30.57■■■□□ 2.49
HOXC9-201ENST00000303450 TMX4Q9H1E5 349 aaPredicted RBP30.57■■■□□ 2.49
HOXC9-201ENST00000303450 ARFGEF1Q9Y6D6 1849 aa30.57■■■□□ 2.48
HOXC9-201ENST00000303450 COL4A1P02462 1669 aa30.56■■■□□ 2.48
HOXC9-201ENST00000303450 DCAF8L1A6NGE4 600 aa30.56■■■□□ 2.48
HOXC9-201ENST00000303450 C7orf43Q8WVR3 580 aa30.56■■■□□ 2.48
HOXC9-201ENST00000303450 MPHOSPH8Q99549 860 aa30.56■■■□□ 2.48
HOXC9-201ENST00000303450 SRGAP3O43295 1099 aa30.55■■■□□ 2.48
HOXC9-201ENST00000303450 SOGA3Q5TF21 947 aa30.55■■■□□ 2.48
HOXC9-201ENST00000303450 ATP6V0A2Q9Y487 856 aa30.55■■■□□ 2.48
HOXC9-201ENST00000303450 MTX1Q13505 466 aa30.54■■■□□ 2.48
HOXC9-201ENST00000303450 SP8Q8IXZ3 490 aa30.54■■■□□ 2.48
HOXC9-201ENST00000303450 ZNF594Q96JF6 807 aaPredicted RBP30.54■■■□□ 2.48
HOXC9-201ENST00000303450 BSDC1Q9NW68 430 aaPredicted RBP30.53■■■□□ 2.48
HOXC9-201ENST00000303450 SPEF2Q9C093 1822 aa30.53■■■□□ 2.48
HOXC9-201ENST00000303450 CC2D2BQ6DHV5 1058 aa30.52■■■□□ 2.48
HOXC9-201ENST00000303450 OLFM4Q6UX06 510 aa30.52■■■□□ 2.48
HOXC9-201ENST00000303450 IRX6P78412 446 aaPredicted RBP30.52■■■□□ 2.48
HOXC9-201ENST00000303450 ATP8B2P98198 1209 aa30.52■■■□□ 2.48
HOXC9-201ENST00000303450 GRIN3BO60391 1043 aa30.51■■■□□ 2.47
HOXC9-201ENST00000303450 CCDC93Q567U6 631 aa30.51■■■□□ 2.47
HOXC9-201ENST00000303450 LDHAL6AQ6ZMR3 332 aa30.51■■■□□ 2.47
HOXC9-201ENST00000303450 PNMA6EA0A0J9YXQ4 647 aa30.5■■■□□ 2.47
HOXC9-201ENST00000303450 RFX5P48382 616 aaPredicted RBP30.5■■■□□ 2.47
HOXC9-201ENST00000303450 CEP85Q6P2H3 762 aa30.5■■■□□ 2.47
HOXC9-201ENST00000303450 KLHDC4Q8TBB5 520 aa30.5■■■□□ 2.47
HOXC9-201ENST00000303450 SLC51AQ86UW1 340 aa30.49■■■□□ 2.47
HOXC9-201ENST00000303450 CNNM1Q9NRU3 951 aa30.49■■■□□ 2.47
HOXC9-201ENST00000303450 ARHGAP27Q6ZUM4 889 aa30.48■■■□□ 2.47
HOXC9-201ENST00000303450 PTPN12Q05209 780 aaKnown RBP30.47■■■□□ 2.47
HOXC9-201ENST00000303450 GRIPAP1Q4V328 841 aa30.47■■■□□ 2.47
HOXC9-201ENST00000303450 RPAP2Q8IXW5 612 aaPredicted RBP30.47■■■□□ 2.47
HOXC9-201ENST00000303450 RTKN2Q8IZC4 609 aa30.47■■■□□ 2.47
HOXC9-201ENST00000303450 EXOC6Q8TAG9 804 aa30.47■■■□□ 2.47
HOXC9-201ENST00000303450 MINPP1Q9UNW1 487 aa30.47■■■□□ 2.47
HOXC9-201ENST00000303450 LRRC37AA6NMS7 1700 aa30.45■■■□□ 2.47
HOXC9-201ENST00000303450 AAMPQ13685 434 aa30.45■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms