RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 ATG3Q9NT62 314 aa8.46□□□□□ -1.06
DEPDC4-201ENST00000299185 TSPYL4Q9UJ04 414 aa8.46□□□□□ -1.06
DEPDC4-201ENST00000299185 BTBD11A6QL63 1104 aa8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 ELL2O00472 640 aaPredicted RBP8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 PTCD1O75127 700 aaKnown RBP8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 ZNF853P0CG23 659 aa8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 PIP4K2AP48426 406 aaPredicted RBP8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 EXOSC9Q06265 439 aaKnown RBP8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 SMIM5Q71RC9 77 aa8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 TSPYL6Q8N831 410 aa8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 ZNF496Q96IT1 587 aaPredicted RBP8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 TSHZ2Q9NRE2 1034 aa8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 LAMB4A4D0S4 1761 aa8.45□□□□□ -1.06
DEPDC4-201ENST00000299185 ERVV-2B6SEH9 535 aa8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 HTATSF1O43719 755 aaKnown RBP8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 INSM1Q01101 510 aaPredicted RBP8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 SLFN5Q08AF3 891 aa8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 ITPK1Q13572 414 aa8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 FAM196AQ6ZSG2 479 aa8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 DEFB132Q7Z7B7 95 aa8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 C8orf58Q8NAV2 365 aa8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 IFT57Q9NWB7 429 aa8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 KAT6BQ8WYB5 2073 aa8.44□□□□□ -1.06
DEPDC4-201ENST00000299185 LY75O60449 1722 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 CHL1O00533 1208 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 ANXA1P04083 346 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 CFHP08603 1231 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 TAF7Q15545 349 aaPredicted RBP8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 CTC1Q2NKJ3 1217 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 DUSP27Q5VZP5 1158 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 WDR63Q8IWG1 891 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 DNAJC10Q8IXB1 793 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 BCL2L13Q9BXK5 485 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 NUP188Q5SRE5 1749 aa8.43□□□□□ -1.06
DEPDC4-201ENST00000299185 AVPP01185 164 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 EIF4A1P60842 406 aaKnown RBP8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 GNAI1P63096 354 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 FOXC1Q12948 553 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 PLA2G2CQ5R387 149 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 ZNF790Q6PG37 636 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 LINC00116Q8NCU8 138 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 PKD2L1Q9P0L9 805 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 IL16Q14005 1332 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 HEG1Q9ULI3 1381 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 RREB1Q92766 1687 aa8.42□□□□□ -1.06
DEPDC4-201ENST00000299185 COL5A3P25940 1745 aaPredicted RBP8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 E9PSI1 815 aa8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 AXIN1O15169 862 aa8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 WIPF1O43516 503 aa8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 APBA3O96018 575 aa8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 RPIAP49247 311 aa8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 PROSER3Q2NL68 480 aa8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 AMIGO3Q86WK7 504 aa8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 TTC5Q8N0Z6 440 aa8.41□□□□□ -1.06
DEPDC4-201ENST00000299185 TUBGCP6Q96RT7 1819 aa8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 CICQ96RK0 1608 aaPredicted RBP8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 LOC102724428A0A0B4J2F2 783 aa8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 CD2BP2O95400 341 aaKnown RBP8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 EIF2S2P20042 333 aaKnown RBP8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 SIK1P57059 783 aa8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 EZH2Q15910 746 aaKnown RBP8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 ZNF827Q17R98 1081 aa8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 TRMT2AQ8IZ69 625 aaKnown RBP8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 MYH16Q9H6N6 1097 aa8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 LRRC4BQ9NT99 713 aa8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 DACH1Q9UI36 760 aa8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 TNNQ9UQP3 1299 aa8.4□□□□□ -1.06
DEPDC4-201ENST00000299185 C4BP0C0L5 1744 aa8.4□□□□□ -1.07
DEPDC4-201ENST00000299185 TAF1LQ8IZX4 1826 aa8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 RCCD1A6NED2 376 aa8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 CALD1Q05682 793 aaKnown RBP8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 TWISTNBQ3B726 338 aaPredicted RBP8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 SCUBE3Q8IX30 993 aa8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 ZNF428Q96B54 188 aa8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 FMNL2Q96PY5 1086 aa8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 CCNL1Q9UK58 526 aaPredicted RBP8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 ZBTB1Q9Y2K1 713 aa8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 USP16Q9Y5T5 823 aa8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 ADGRG1Q9Y653 693 aa8.39□□□□□ -1.07
DEPDC4-201ENST00000299185 RGPD3A6NKT7 1758 aaPredicted RBP8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 RGPD4Q7Z3J3 1758 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 GIGYF1O75420 1035 aaPredicted RBP8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 A1BGP04217 495 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 ATP6V1AP38606 617 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 SMCPP49901 116 aaPredicted RBP8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 TXNRD1Q16881 649 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 FAM161AQ3B820 660 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 NBPF14Q5TI25 921 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 NBPF10Q6P3W6 841 aaKnown RBP8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 CYP4X1Q8N118 509 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 NGEFQ8N5V2 710 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 NBPF15Q8N660 670 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 TOR4AQ9NXH8 423 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 CHPF2Q9P2E5 772 aa8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 GMPR2Q9P2T1 348 aaKnown RBP8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 ZNF330Q9Y3S2 320 aaPredicted RBP8.38□□□□□ -1.07
DEPDC4-201ENST00000299185 MYH14Q7Z406 1995 aaKnown RBP8.37□□□□□ -1.07
DEPDC4-201ENST00000299185 VAMP4O75379 141 aa8.37□□□□□ -1.07
DEPDC4-201ENST00000299185 SLC10A3P09131 477 aa8.37□□□□□ -1.07
DEPDC4-201ENST00000299185 PTGDRQ13258 359 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms