RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CRACR2AQ9BSW2 395 aa7.4□□□□□ -1.23
VPS35-201ENST00000299138 SWAP70Q9UH65 585 aa7.4□□□□□ -1.23
VPS35-201ENST00000299138 SPATA32Q96LK8 384 aa7.4□□□□□ -1.23
VPS35-201ENST00000299138 CLSTN2Q9H4D0 955 aa7.4□□□□□ -1.23
VPS35-201ENST00000299138 LARP1BQ659C4 914 aaKnown RBP7.39□□□□□ -1.23
VPS35-201ENST00000299138 SEPT14Q6ZU15 432 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 ANKRD24Q8TF21 1146 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 ANKRD7Q92527 254 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 SDF4Q9BRK5 362 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 GTF2E1P29083 439 aaPredicted RBP7.39□□□□□ -1.23
VPS35-201ENST00000299138 LMAN1P49257 510 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 MTX1Q13505 466 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 CEP57Q86XR8 500 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 WHAMMQ8TF30 809 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 CEP83Q9Y592 693 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 U3KPZ7 1027 aaPredicted RBP7.39□□□□□ -1.23
VPS35-201ENST00000299138 PLEKHG3A1L390 1219 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 SLC4A2P04920 1241 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 GSPT1P15170 499 aaKnown RBP7.39□□□□□ -1.23
VPS35-201ENST00000299138 CABP1Q9NZU7 370 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 GLI2P10070 1586 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 TULP4Q9NRJ4 1543 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 TECPR2O15040 1411 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 USP48Q86UV5 1035 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 ECM2O94769 699 aaPredicted RBP7.39□□□□□ -1.23
VPS35-201ENST00000299138 NAA25Q14CX7 972 aa7.39□□□□□ -1.23
VPS35-201ENST00000299138 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS35-201ENST00000299138 CCDC43Q96MW1 224 aaKnown RBP7.39□□□□□ -1.23
VPS35-201ENST00000299138 CPLX1O14810 134 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 SFPQP23246 707 aaKnown RBP eCLIP7.38□□□□□ -1.23
VPS35-201ENST00000299138 DIXDC1Q155Q3 683 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 KCNB2Q92953 911 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 MRVI1Q9Y6F6 885 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 G3V3G9 751 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 DCAF8Q5TAQ9 597 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 PYM1Q9BRP8 204 aaKnown RBP7.38□□□□□ -1.23
VPS35-201ENST00000299138 CTNNA3Q9UI47 895 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 ATP10DQ9P241 1426 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 ZNF165P49910 485 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 UBXN4Q92575 508 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 G3BP1Q13283 466 aaKnown RBP eCLIP7.38□□□□□ -1.239e-7■■■■□ 19.7
VPS35-201ENST00000299138 FILIP1LQ4L180 1135 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 SBNO1A3KN83 1393 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 GOLIM4O00461 696 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 GPT2Q8TD30 523 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 KIF4AO95239 1232 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 SERPINC1P01008 464 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 MSL3Q8N5Y2 521 aaKnown RBP7.38□□□□□ -1.23
VPS35-201ENST00000299138 MPHOSPH8Q99549 860 aa7.38□□□□□ -1.23
VPS35-201ENST00000299138 CAMSAP1Q5T5Y3 1602 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 SYT1P21579 422 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 DNAI2Q9GZS0 605 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 CDKL5O76039 1030 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 TSGA10IPQ3SY00 556 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 CCDC83Q8IWF9 413 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 MICALL1Q8N3F8 863 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 SHPRHQ149N8 1683 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 PTPRUQ92729 1446 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 A0A1W2PQ27 194 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 A0A1W2PQ64 194 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 A0A1W2PQD8 194 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 CCDC6Q16204 474 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 WAPLQ7Z5K2 1190 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 TXNDC2Q86VQ3 553 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 MAGEC2Q9UBF1 373 aaPredicted RBP7.37□□□□□ -1.23
VPS35-201ENST00000299138 FIBPO43427 364 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 TYRO3Q06418 890 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 TTC31Q49AM3 519 aaPredicted RBP7.37□□□□□ -1.23
VPS35-201ENST00000299138 CEP120Q8N960 986 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 UTP14AQ9BVJ6 771 aaKnown RBP7.37□□□□□ -1.23
VPS35-201ENST00000299138 GOPCQ9HD26 462 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 FAM114A2Q9NRY5 505 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 RBM43Q6ZSC3 357 aaKnown RBP7.37□□□□□ -1.23
VPS35-201ENST00000299138 AGLP35573 1532 aa7.37□□□□□ -1.23
VPS35-201ENST00000299138 SURF6O75683 361 aaKnown RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 HOXA7P31268 230 aaPredicted RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 CLIP2Q9UDT6 1046 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 NGDNQ8NEJ9 315 aaKnown RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 RHPN1Q8TCX5 695 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 KCNG4Q8TDN1 519 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 FBF1Q8TES7 1133 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 BCL2L12Q9HB09 334 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 ZNHIT6Q9NWK9 470 aaKnown RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 MORC2Q9Y6X9 1032 aaPredicted RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 MROH1Q8NDA8 1641 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 USP31Q70CQ4 1352 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 QRICH2Q9H0J4 1663 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 NT5C2P49902 561 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 ZNF75DP51815 510 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 RBM6P78332 1123 aaKnown RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 AMOTQ4VCS5 1084 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 CEP135Q66GS9 1140 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 APBB1IPQ7Z5R6 666 aaPredicted RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 MORC4Q8TE76 937 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 DDX41Q9UJV9 622 aaKnown RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 RPAP1Q9BWH6 1393 aaPredicted RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 TTC36A6NLP5 189 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 HCLS1P14317 486 aaPredicted RBP7.36□□□□□ -1.23
VPS35-201ENST00000299138 IQCEQ6IPM2 695 aa7.36□□□□□ -1.23
VPS35-201ENST00000299138 THEMISQ8N1K5 641 aaPredicted RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms