RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 CIZ1Q9ULV3 898 aaPredicted RBP18.51■□□□□ 0.55
SF3B4-201ENST00000271628 MCM2P49736 904 aa18.5■□□□□ 0.55
SF3B4-201ENST00000271628 TAF7LQ5H9L4 462 aa18.5■□□□□ 0.55
SF3B4-201ENST00000271628 AEBP2Q6ZN18 517 aaPredicted RBP18.5■□□□□ 0.55
SF3B4-201ENST00000271628 CEP126Q9P2H0 1117 aa18.5■□□□□ 0.55
SF3B4-201ENST00000271628 IRS4O14654 1257 aaPredicted RBP18.5■□□□□ 0.55
SF3B4-201ENST00000271628 MCM4P33991 863 aa18.5■□□□□ 0.55
SF3B4-201ENST00000271628 MEX3CQ5U5Q3 659 aaKnown RBP18.5■□□□□ 0.55
SF3B4-201ENST00000271628 ZNF594Q96JF6 807 aaPredicted RBP18.5■□□□□ 0.55
SF3B4-201ENST00000271628 DBNDD2Q9BQY9 259 aa18.5■□□□□ 0.55
SF3B4-201ENST00000271628 FSD1Q9BTV5 496 aa18.5■□□□□ 0.55
SF3B4-201ENST00000271628 LSG1Q9H089 658 aaKnown RBP18.5■□□□□ 0.55
SF3B4-201ENST00000271628 PDE8AO60658 829 aa18.49■□□□□ 0.55
SF3B4-201ENST00000271628 LRRC24Q50LG9 513 aa18.49■□□□□ 0.55
SF3B4-201ENST00000271628 L1TD1Q5T7N2 865 aaKnown RBP18.49■□□□□ 0.55
SF3B4-201ENST00000271628 TICAM2Q86XR7 235 aa18.49■□□□□ 0.55
SF3B4-201ENST00000271628 TTLL11Q8NHH1 800 aa18.49■□□□□ 0.55
SF3B4-201ENST00000271628 AKAP2Q9Y2D5 859 aa18.49■□□□□ 0.55
SF3B4-201ENST00000271628 DDIT3P35638 169 aa18.48■□□□□ 0.55
SF3B4-201ENST00000271628 NEUROD6Q96NK8 337 aa18.48■□□□□ 0.55
SF3B4-201ENST00000271628 MYH3P11055 1940 aa18.48■□□□□ 0.55
SF3B4-201ENST00000271628 NEK4P51957 841 aa18.48■□□□□ 0.55
SF3B4-201ENST00000271628 CTSWP56202 376 aa18.48■□□□□ 0.55
SF3B4-201ENST00000271628 PARP10Q53GL7 1025 aa18.48■□□□□ 0.55
SF3B4-201ENST00000271628 HAUS7Q99871 368 aa18.48■□□□□ 0.55
SF3B4-201ENST00000271628 THSD7AQ9UPZ6 1657 aa18.48■□□□□ 0.55
SF3B4-201ENST00000271628 RFX7Q2KHR2 1363 aa18.47■□□□□ 0.55
SF3B4-201ENST00000271628 COL5A3P25940 1745 aaPredicted RBP18.47■□□□□ 0.55
SF3B4-201ENST00000271628 HSP90B1P14625 803 aaKnown RBP18.47■□□□□ 0.55
SF3B4-201ENST00000271628 GJD4Q96KN9 370 aaPredicted RBP18.47■□□□□ 0.55
SF3B4-201ENST00000271628 SNRKQ9NRH2 765 aa18.47■□□□□ 0.55
SF3B4-201ENST00000271628 PALD1Q9ULE6 856 aa18.47■□□□□ 0.55
SF3B4-201ENST00000271628 UBN2Q6ZU65 1347 aa18.47■□□□□ 0.55
SF3B4-201ENST00000271628 MYH14Q7Z406 1995 aaKnown RBP18.47■□□□□ 0.55
SF3B4-201ENST00000271628 ANKRD18BA2A2Z9 1011 aa18.46■□□□□ 0.55
SF3B4-201ENST00000271628 TIMM10P62072 90 aa18.46■□□□□ 0.55
SF3B4-201ENST00000271628 ZNF652Q9Y2D9 606 aa18.46■□□□□ 0.55
SF3B4-201ENST00000271628 A0A1B0GUL7 405 aa18.46■□□□□ 0.55
SF3B4-201ENST00000271628 CAMTA2O94983 1202 aa18.46■□□□□ 0.55
SF3B4-201ENST00000271628 PUS3Q9BZE2 481 aaKnown RBP18.46■□□□□ 0.55
SF3B4-201ENST00000271628 ZNF609O15014 1411 aa18.46■□□□□ 0.55
SF3B4-201ENST00000271628 ITGA6P23229 1130 aa18.45■□□□□ 0.54
SF3B4-201ENST00000271628 SYNE4Q8N205 404 aa18.45■□□□□ 0.54
SF3B4-201ENST00000271628 SH3TC1Q8TE82 1336 aa18.45■□□□□ 0.54
SF3B4-201ENST00000271628 HSPA1LP34931 641 aa18.45■□□□□ 0.54
SF3B4-201ENST00000271628 CLEC4GQ6UXB4 293 aa18.45■□□□□ 0.54
SF3B4-201ENST00000271628 LDHAL6AQ6ZMR3 332 aa18.45■□□□□ 0.54
SF3B4-201ENST00000271628 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.45■□□□□ 0.54
SF3B4-201ENST00000271628 UTP14AQ9BVJ6 771 aaKnown RBP18.45■□□□□ 0.54
SF3B4-201ENST00000271628 RGL2O15211 777 aa18.44■□□□□ 0.54
SF3B4-201ENST00000271628 NMIQ13287 307 aaPredicted RBP18.44■□□□□ 0.54
SF3B4-201ENST00000271628 CCDC85AQ96PX6 553 aaPredicted RBP18.44■□□□□ 0.54
SF3B4-201ENST00000271628 GREM2Q9H772 168 aa18.44■□□□□ 0.54
SF3B4-201ENST00000271628 RTN4Q9NQC3 1192 aaKnown RBP18.44■□□□□ 0.54
SF3B4-201ENST00000271628 ONECUT3O60422 494 aaPredicted RBP18.43■□□□□ 0.54
SF3B4-201ENST00000271628 CCDC158Q5M9N0 1113 aa18.43■□□□□ 0.54
SF3B4-201ENST00000271628 SUSD4Q5VX71 490 aa18.43■□□□□ 0.54
SF3B4-201ENST00000271628 CNTNAP4Q9C0A0 1308 aa18.43■□□□□ 0.54
SF3B4-201ENST00000271628 FAM227BQ96M60 508 aa18.43■□□□□ 0.54
SF3B4-201ENST00000271628 DNAJC2Q99543 621 aaKnown RBP18.43■□□□□ 0.54
SF3B4-201ENST00000271628 CWC22Q9HCG8 908 aaKnown RBP18.43■□□□□ 0.54
SF3B4-201ENST00000271628 TRPC5Q9UL62 973 aaPredicted RBP18.43■□□□□ 0.54
SF3B4-201ENST00000271628 AFF2P51816 1311 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 CCDC171Q6TFL3 1326 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 DDX11L8A8MPP1 907 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 RC3H1Q5TC82 1133 aaKnown RBP18.42■□□□□ 0.54
SF3B4-201ENST00000271628 KBTBD3Q8NAB2 608 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 MAP4K1Q92918 833 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 RIPOR2Q9Y4F9 1068 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 SNX14Q9Y5W7 946 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 NHSQ6T4R5 1651 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 LINC00116Q8NCU8 138 aa18.42■□□□□ 0.54
SF3B4-201ENST00000271628 NIP7Q9Y221 180 aaKnown RBP eCLIP18.42■□□□□ 0.54
SF3B4-201ENST00000271628 IFIT1P09914 478 aaKnown RBP18.41■□□□□ 0.54
SF3B4-201ENST00000271628 PTH1RQ03431 593 aa18.41■□□□□ 0.54
SF3B4-201ENST00000271628 GORABQ5T7V8 394 aa18.41■□□□□ 0.54
SF3B4-201ENST00000271628 CNNM1Q9NRU3 951 aa18.41■□□□□ 0.54
SF3B4-201ENST00000271628 PAG1Q9NWQ8 432 aa18.41■□□□□ 0.54
SF3B4-201ENST00000271628 A0A0D9SFI3 127 aa18.4■□□□□ 0.54
SF3B4-201ENST00000271628 ZKSCAN1P17029 563 aaPredicted RBP18.4■□□□□ 0.54
SF3B4-201ENST00000271628 METTL24Q5JXM2 366 aa18.4■□□□□ 0.54
SF3B4-201ENST00000271628 KCNB2Q92953 911 aa18.4■□□□□ 0.54
SF3B4-201ENST00000271628 EDC3Q96F86 508 aaKnown RBP18.4■□□□□ 0.54
SF3B4-201ENST00000271628 SPEF2Q9C093 1822 aa18.4■□□□□ 0.54
SF3B4-201ENST00000271628 MED23Q9ULK4 1368 aa18.4■□□□□ 0.54
SF3B4-201ENST00000271628 KCNJ4P48050 445 aa18.4■□□□□ 0.54
SF3B4-201ENST00000271628 NECTIN1Q15223 517 aa18.4■□□□□ 0.54
SF3B4-201ENST00000271628 FOXD4L1Q9NU39 408 aa18.4■□□□□ 0.54
SF3B4-201ENST00000271628 BTAF1O14981 1849 aa18.39■□□□□ 0.54
SF3B4-201ENST00000271628 BCORQ6W2J9 1755 aa18.39■□□□□ 0.53
SF3B4-201ENST00000271628 TRAK2O60296 914 aa18.39■□□□□ 0.53
SF3B4-201ENST00000271628 RAB3GAP1Q15042 981 aa18.39■□□□□ 0.53
SF3B4-201ENST00000271628 RNF20Q5VTR2 975 aa18.39■□□□□ 0.53
SF3B4-201ENST00000271628 XAGE2Q96GT9 111 aa18.39■□□□□ 0.53
SF3B4-201ENST00000271628 ATRNO75882 1429 aa18.39■□□□□ 0.53
SF3B4-201ENST00000271628 LRRFIP1Q32MZ4 808 aaKnown RBP18.38■□□□□ 0.53
SF3B4-201ENST00000271628 DDX46Q7L014 1031 aaKnown RBP18.38■□□□□ 0.53
SF3B4-201ENST00000271628 TM6SF1Q9BZW5 370 aa18.38■□□□□ 0.53
SF3B4-201ENST00000271628 ABCC12Q96J65 1359 aa18.38■□□□□ 0.53
SF3B4-201ENST00000271628 NTSR2O95665 410 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms