RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 CASC1Q6TDU7 716 aa20.03■□□□□ 0.8
TPM1-201ENST00000267996 ZNF594Q96JF6 807 aaPredicted RBP20.03■□□□□ 0.8
TPM1-201ENST00000267996 MSH5O43196 834 aa20.02■□□□□ 0.8
TPM1-201ENST00000267996 TRIM37O94972 964 aa20.02■□□□□ 0.8
TPM1-201ENST00000267996 IFIT5Q13325 482 aaKnown RBP20.02■□□□□ 0.8
TPM1-201ENST00000267996 CCDC8Q9H0W5 538 aaPredicted RBP20.02■□□□□ 0.8
TPM1-201ENST00000267996 RXRBP28702 533 aa20.01■□□□□ 0.79
TPM1-201ENST00000267996 RBM25P49756 843 aaKnown RBP20.01■□□□□ 0.79
TPM1-201ENST00000267996 LRRC24Q50LG9 513 aa20.01■□□□□ 0.79
TPM1-201ENST00000267996 AMIGO3Q86WK7 504 aa20.01■□□□□ 0.79
TPM1-201ENST00000267996 FBXO41Q8TF61 875 aa20.01■□□□□ 0.79
TPM1-201ENST00000267996 GREM2Q9H772 168 aa20.01■□□□□ 0.79
TPM1-201ENST00000267996 TLR7Q9NYK1 1049 aaKnown RBP20.01■□□□□ 0.79
TPM1-201ENST00000267996 LAMB2P55268 1798 aa20.01■□□□□ 0.79
TPM1-201ENST00000267996 TRIM6-TRIM34B2RNG4 842 aa20■□□□□ 0.79
TPM1-201ENST00000267996 HSP90B1P14625 803 aaKnown RBP20■□□□□ 0.79
TPM1-201ENST00000267996 CHMLP26374 656 aa20■□□□□ 0.79
TPM1-201ENST00000267996 SMIM5Q71RC9 77 aa20■□□□□ 0.79
TPM1-201ENST00000267996 RILPL2Q969X0 211 aa20■□□□□ 0.79
TPM1-201ENST00000267996 PUS3Q9BZE2 481 aaKnown RBP20■□□□□ 0.79
TPM1-201ENST00000267996 RGS17Q9UGC6 210 aaPredicted RBP20■□□□□ 0.79
TPM1-201ENST00000267996 DBNLQ9UJU6 430 aaKnown RBP20■□□□□ 0.79
TPM1-201ENST00000267996 DDX60Q8IY21 1712 aaKnown RBP20■□□□□ 0.79
TPM1-201ENST00000267996 ITGA6P23229 1130 aa19.99■□□□□ 0.79
TPM1-201ENST00000267996 ARHGEF1Q92888 912 aaKnown RBP19.99■□□□□ 0.79
TPM1-201ENST00000267996 RTL9Q8NET4 1388 aa19.98■□□□□ 0.79
TPM1-201ENST00000267996 ANKRD18BA2A2Z9 1011 aa19.98■□□□□ 0.79
TPM1-201ENST00000267996 ADRA2BP18089 450 aa19.98■□□□□ 0.79
TPM1-201ENST00000267996 USPL1Q5W0Q7 1092 aa19.98■□□□□ 0.79
TPM1-201ENST00000267996 CNTROBQ8N137 903 aa19.98■□□□□ 0.79
TPM1-201ENST00000267996 SRP68Q9UHB9 627 aaKnown RBP19.98■□□□□ 0.79
TPM1-201ENST00000267996 EP400Q96L91 3159 aa19.98■□□□□ 0.79
TPM1-201ENST00000267996 AK9Q5TCS8 1911 aa19.98■□□□□ 0.79
TPM1-201ENST00000267996 ZPR1O75312 459 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 HCLS1P14317 486 aaPredicted RBP19.97■□□□□ 0.79
TPM1-201ENST00000267996 TBC1D9BQ66K14 1250 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 CCDC85AQ96PX6 553 aaPredicted RBP19.97■□□□□ 0.79
TPM1-201ENST00000267996 RIPOR2Q9Y4F9 1068 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 C4AP0C0L4 1744 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 COL24A1Q17RW2 1714 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 ZNF609O15014 1411 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 ATP5JP18859 108 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 HMGB2P26583 209 aaKnown RBP19.97■□□□□ 0.79
TPM1-201ENST00000267996 TAF7LQ5H9L4 462 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 TRAPPC3LQ5T215 181 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 CEP126Q9P2H0 1117 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 LRP5O75197 1615 aa19.97■□□□□ 0.79
TPM1-201ENST00000267996 UBR3Q6ZT12 1888 aa19.96■□□□□ 0.79
TPM1-201ENST00000267996 FAM177BA6PVY3 158 aa19.96■□□□□ 0.79
TPM1-201ENST00000267996 DBNDD2Q9BQY9 259 aa19.96■□□□□ 0.79
TPM1-201ENST00000267996 ESYT1Q9BSJ8 1104 aa19.96■□□□□ 0.79
TPM1-201ENST00000267996 SLC10A5Q5PT55 438 aa19.95■□□□□ 0.78
TPM1-201ENST00000267996 PROM2Q8N271 834 aa19.95■□□□□ 0.78
TPM1-201ENST00000267996 EVI5LQ96CN4 794 aa19.95■□□□□ 0.78
TPM1-201ENST00000267996 USP26Q9BXU7 913 aa19.95■□□□□ 0.78
TPM1-201ENST00000267996 RIC1Q4ADV7 1423 aa19.95■□□□□ 0.78
TPM1-201ENST00000267996 PLSCR1O15162 318 aa19.94■□□□□ 0.78
TPM1-201ENST00000267996 REC8O95072 547 aa19.94■□□□□ 0.78
TPM1-201ENST00000267996 MAP4K4O95819 1239 aaPredicted RBP19.94■□□□□ 0.78
TPM1-201ENST00000267996 TXNRD1Q16881 649 aa19.94■□□□□ 0.78
TPM1-201ENST00000267996 RFC4P35249 363 aa19.94■□□□□ 0.78
TPM1-201ENST00000267996 CCDC152Q4G0S7 254 aa19.94■□□□□ 0.78
TPM1-201ENST00000267996 LDHAL6AQ6ZMR3 332 aa19.94■□□□□ 0.78
TPM1-201ENST00000267996 TIMM10P62072 90 aa19.93■□□□□ 0.78
TPM1-201ENST00000267996 ERFEQ4G0M1 354 aa19.93■□□□□ 0.78
TPM1-201ENST00000267996 POTEAQ6S8J7 498 aa19.93■□□□□ 0.78
TPM1-201ENST00000267996 SETDB2Q96T68 719 aa19.93■□□□□ 0.78
TPM1-201ENST00000267996 NYXQ9GZU5 481 aa19.93■□□□□ 0.78
TPM1-201ENST00000267996 AKAP2Q9Y2D5 859 aa19.93■□□□□ 0.78
TPM1-201ENST00000267996 A0A1B0GUL7 405 aa19.92■□□□□ 0.78
TPM1-201ENST00000267996 SSFA2P28290 1259 aa19.92■□□□□ 0.78
TPM1-201ENST00000267996 SF3B3Q15393 1217 aaKnown RBP19.92■□□□□ 0.78
TPM1-201ENST00000267996 BOLA2Q9H3K6 86 aa19.92■□□□□ 0.78
TPM1-201ENST00000267996 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.91■□□□□ 0.78
TPM1-201ENST00000267996 VGLL2Q8N8G2 317 aa19.91■□□□□ 0.78
TPM1-201ENST00000267996 KIF2CQ99661 725 aa19.91■□□□□ 0.78
TPM1-201ENST00000267996 EPB41L2O43491 1005 aaKnown RBP19.91■□□□□ 0.78
TPM1-201ENST00000267996 BICDL1Q6ZP65 573 aa19.91■□□□□ 0.78
TPM1-201ENST00000267996 HAUS7Q99871 368 aa19.91■□□□□ 0.78
TPM1-201ENST00000267996 PHF14O94880 888 aa19.9■□□□□ 0.78
TPM1-201ENST00000267996 NEUROD6Q96NK8 337 aa19.9■□□□□ 0.78
TPM1-201ENST00000267996 CNNM1Q9NRU3 951 aa19.9■□□□□ 0.78
TPM1-201ENST00000267996 ABCC12Q96J65 1359 aa19.9■□□□□ 0.78
TPM1-201ENST00000267996 METTL24Q5JXM2 366 aa19.89■□□□□ 0.77
TPM1-201ENST00000267996 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.89■□□□□ 0.77
TPM1-201ENST00000267996 SEC31BQ9NQW1 1179 aa19.89■□□□□ 0.77
TPM1-201ENST00000267996 SGSM2O43147 1006 aa19.88■□□□□ 0.77
TPM1-201ENST00000267996 MROH5Q6ZUA9 1318 aa19.88■□□□□ 0.77
TPM1-201ENST00000267996 HIP1O00291 1037 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 APBA3O96018 575 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 TPTE2Q6XPS3 522 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 C3orf67Q6ZVT6 689 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 NBPF5PQ86XG9 351 aaPredicted RBP19.87■□□□□ 0.77
TPM1-201ENST00000267996 IL25Q9H293 177 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 TNS1Q9HBL0 1735 aaKnown RBP19.87■□□□□ 0.77
TPM1-201ENST00000267996 RFX7Q2KHR2 1363 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 PDE8BO95263 885 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 NFIXQ14938 502 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 ATP2B3Q16720 1220 aa19.87■□□□□ 0.77
TPM1-201ENST00000267996 XAGE2Q96GT9 111 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms