RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 PA2G4Q9UQ80 394 aaKnown RBP12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 CHMP3Q9Y3E7 222 aa12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 DDX60Q8IY21 1712 aaKnown RBP12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 CDHR2Q9BYE9 1310 aa12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 GTF2E1P29083 439 aaPredicted RBP12.13□□□□□ -0.47
SNRNP40-201ENST00000263694 RABL6Q3YEC7 729 aaPredicted RBP12.13□□□□□ -0.47
SNRNP40-201ENST00000263694 C3orf67Q6ZVT6 689 aa12.13□□□□□ -0.47
SNRNP40-201ENST00000263694 EXOC6BQ9Y2D4 811 aa12.13□□□□□ -0.47
SNRNP40-201ENST00000263694 MYH3P11055 1940 aa12.13□□□□□ -0.47
SNRNP40-201ENST00000263694 HMMRO75330 724 aa12.13□□□□□ -0.47
SNRNP40-201ENST00000263694 MTX1Q13505 466 aa12.13□□□□□ -0.47
SNRNP40-201ENST00000263694 HDAC5Q9UQL6 1122 aa12.13□□□□□ -0.47
SNRNP40-201ENST00000263694 ABCC12Q96J65 1359 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 QSER1Q2KHR3 1735 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 POLRMTO00411 1230 aaKnown RBP12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 PDE8AO60658 829 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 SERPINB2P05120 415 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 TPTE2Q6XPS3 522 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 SMC5Q8IY18 1101 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 NLGN1Q8N2Q7 840 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 TTLL11Q8NHH1 800 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 ZNF594Q96JF6 807 aaPredicted RBP12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 PLA2G12BQ9BX93 195 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 DCTPP1Q9H773 170 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 PDZRN3Q9UPQ7 1066 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 CASZ1Q86V15 1759 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 CARMIL3Q8ND23 1372 aa12.12□□□□□ -0.47
SNRNP40-201ENST00000263694 NPHP1O15259 732 aa12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 SMARCA5O60264 1052 aaPredicted RBP12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 SURF6O75683 361 aaKnown RBP12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 CSF1RP07333 972 aa12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 TAF1P21675 1872 aa12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 RFX5P48382 616 aaPredicted RBP12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 CTSWP56202 376 aa12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 R3HDM1Q15032 1099 aaKnown RBP12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 FAM161AQ3B820 660 aa12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 NYXQ9GZU5 481 aa12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 SIL1Q9H173 461 aa12.11□□□□□ -0.47
SNRNP40-201ENST00000263694 MMP10P09238 476 aa12.1□□□□□ -0.47
SNRNP40-201ENST00000263694 ANKRD45Q5TZF3 282 aa12.1□□□□□ -0.47
SNRNP40-201ENST00000263694 PRR5LQ6MZQ0 368 aa12.1□□□□□ -0.47
SNRNP40-201ENST00000263694 CNBD1Q8NA66 436 aa12.1□□□□□ -0.47
SNRNP40-201ENST00000263694 GREM2Q9H772 168 aa12.1□□□□□ -0.47
SNRNP40-201ENST00000263694 LAMB2P55268 1798 aa12.1□□□□□ -0.47
SNRNP40-201ENST00000263694 PSDA5PKW4 1024 aaPredicted RBP12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 PTPN12Q05209 780 aaKnown RBP12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 SLC10A5Q5PT55 438 aa12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 GCC1Q96CN9 775 aa12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 SEC31BQ9NQW1 1179 aa12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 ITGA6P23229 1130 aa12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 PUS3Q9BZE2 481 aaKnown RBP12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 LNPKQ9C0E8 428 aa12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.09□□□□□ -0.47
SNRNP40-201ENST00000263694 COL4A1P02462 1669 aa12.08□□□□□ -0.48
SNRNP40-201ENST00000263694 TNRC6CQ9HCJ0 1690 aaKnown RBP12.08□□□□□ -0.48
SNRNP40-201ENST00000263694 ZBTB7AO95365 584 aa12.08□□□□□ -0.48
SNRNP40-201ENST00000263694 NUCB1Q02818 461 aa12.08□□□□□ -0.48
SNRNP40-201ENST00000263694 CCDC57Q2TAC2 916 aa12.08□□□□□ -0.48
SNRNP40-201ENST00000263694 PARP3Q9Y6F1 533 aa12.08□□□□□ -0.48
SNRNP40-201ENST00000263694 PDE4AP27815 886 aa12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 RGS3P49796 1198 aa12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 IFIT5Q13325 482 aaKnown RBP12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 OS9Q13438 667 aaPredicted RBP12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 LRRC24Q50LG9 513 aa12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 CHD1LQ86WJ1 897 aa12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 C16orf71Q8IYS4 520 aaPredicted RBP12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 IL1RAPL2Q9NP60 686 aa12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 COPRSQ9NQ92 184 aa12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 NOP58Q9Y2X3 529 aaKnown RBP12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 SPEF2Q9C093 1822 aa12.07□□□□□ -0.48
SNRNP40-201ENST00000263694 ANKRD18BA2A2Z9 1011 aa12.06□□□□□ -0.48
SNRNP40-201ENST00000263694 SASH1O94885 1247 aa12.06□□□□□ -0.48
SNRNP40-201ENST00000263694 G3BP1Q13283 466 aaKnown RBP eCLIP12.06□□□□□ -0.48
SNRNP40-201ENST00000263694 CCDC152Q4G0S7 254 aa12.06□□□□□ -0.48
SNRNP40-201ENST00000263694 OTUD7AQ8TE49 926 aaPredicted RBP12.06□□□□□ -0.48
SNRNP40-201ENST00000263694 NLRP3Q96P20 1036 aa12.06□□□□□ -0.48
SNRNP40-201ENST00000263694 ANKRD31Q8N7Z5 1873 aa12.06□□□□□ -0.48
SNRNP40-201ENST00000263694 NRXN2Q9P2S2 1712 aa12.06□□□□□ -0.48
SNRNP40-201ENST00000263694 ST5P78524 1137 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 SF3B3Q15393 1217 aaKnown RBP12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 TAF7LQ5H9L4 462 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 ATG9AQ7Z3C6 839 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 RHPN1Q8TCX5 695 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 LRRCC1Q9C099 1032 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 SPDYE2BA6NHP3 402 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 SPDYE6P0CI01 402 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 HSP90B1P14625 803 aaKnown RBP12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 SPDYE2Q495Y8 402 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 SLC51AQ86UW1 340 aa12.05□□□□□ -0.48
SNRNP40-201ENST00000263694 EYA2O00167 538 aa12.04□□□□□ -0.48
SNRNP40-201ENST00000263694 RAB11FIP3O75154 756 aa12.04□□□□□ -0.48
SNRNP40-201ENST00000263694 EVX2Q03828 476 aa12.04□□□□□ -0.48
SNRNP40-201ENST00000263694 TFCP2Q12800 502 aa12.04□□□□□ -0.48
SNRNP40-201ENST00000263694 LDHAL6AQ6ZMR3 332 aa12.04□□□□□ -0.48
SNRNP40-201ENST00000263694 SLC16A10Q8TF71 515 aa12.04□□□□□ -0.48
SNRNP40-201ENST00000263694 CELF1Q92879 486 aaKnown RBP12.04□□□□□ -0.48
SNRNP40-201ENST00000263694 HSP90AB4PQ58FF6 505 aa12.03□□□□□ -0.48
SNRNP40-201ENST00000263694 KIF1BPQ96EK5 621 aa12.03□□□□□ -0.48
SNRNP40-201ENST00000263694 CNNM1Q9NRU3 951 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms