RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 PA2G4Q9UQ80 394 aaKnown RBP34.23■■■■□ 3.07
SMARCD3-201ENST00000262188 PARP3Q9Y6F1 533 aa34.23■■■■□ 3.07
SMARCD3-201ENST00000262188 MTX1Q13505 466 aa34.23■■■■□ 3.07
SMARCD3-201ENST00000262188 RWDD1Q9H446 243 aaPredicted RBP34.23■■■■□ 3.07
SMARCD3-201ENST00000262188 SSH3Q8TE77 659 aa34.22■■■■□ 3.07
SMARCD3-201ENST00000262188 GREM2Q9H772 168 aa34.22■■■■□ 3.07
SMARCD3-201ENST00000262188 TNRC6CQ9HCJ0 1690 aaKnown RBP34.22■■■■□ 3.07
SMARCD3-201ENST00000262188 KDM2BQ8NHM5 1336 aa34.21■■■■□ 3.07
SMARCD3-201ENST00000262188 POLA2Q14181 598 aa34.21■■■■□ 3.07
SMARCD3-201ENST00000262188 MYH3P11055 1940 aa34.2■■■■□ 3.07
SMARCD3-201ENST00000262188 LAMB2P55268 1798 aa34.2■■■■□ 3.07
SMARCD3-201ENST00000262188 CSF1RP07333 972 aa34.2■■■■□ 3.06
SMARCD3-201ENST00000262188 SLC10A5Q5PT55 438 aa34.2■■■■□ 3.06
SMARCD3-201ENST00000262188 SLC16A10Q8TF71 515 aa34.19■■■■□ 3.06
SMARCD3-201ENST00000262188 ZNF594Q96JF6 807 aaPredicted RBP34.19■■■■□ 3.06
SMARCD3-201ENST00000262188 EXOC6BQ9Y2D4 811 aa34.19■■■■□ 3.06
SMARCD3-201ENST00000262188 APBB1O00213 710 aa34.18■■■■□ 3.06
SMARCD3-201ENST00000262188 RFX5P48382 616 aaPredicted RBP34.17■■■■□ 3.06
SMARCD3-201ENST00000262188 ST5P78524 1137 aa34.17■■■■□ 3.06
SMARCD3-201ENST00000262188 SEC31BQ9NQW1 1179 aa34.17■■■■□ 3.06
SMARCD3-201ENST00000262188 HMMRO75330 724 aa34.16■■■■□ 3.06
SMARCD3-201ENST00000262188 SKAP1Q86WV1 359 aa34.16■■■■□ 3.06
SMARCD3-201ENST00000262188 SIL1Q9H173 461 aa34.16■■■■□ 3.06
SMARCD3-201ENST00000262188 NRXN2Q9P2S2 1712 aa34.16■■■■□ 3.06
SMARCD3-201ENST00000262188 COL4A1P02462 1669 aa34.16■■■■□ 3.06
SMARCD3-201ENST00000262188 ITGA6P23229 1130 aa34.14■■■■□ 3.06
SMARCD3-201ENST00000262188 NLRP3Q96P20 1036 aa34.14■■■■□ 3.06
SMARCD3-201ENST00000262188 MTFR1LQ9H019 292 aa34.14■■■■□ 3.06
SMARCD3-201ENST00000262188 SURF6O75683 361 aaKnown RBP34.13■■■■□ 3.05
SMARCD3-201ENST00000262188 PTPN12Q05209 780 aaKnown RBP34.13■■■■□ 3.05
SMARCD3-201ENST00000262188 DCTPP1Q9H773 170 aa34.12■■■■□ 3.05
SMARCD3-201ENST00000262188 TAF1P21675 1872 aa34.12■■■■□ 3.05
SMARCD3-201ENST00000262188 CCDC57Q2TAC2 916 aa34.12■■■■□ 3.05
SMARCD3-201ENST00000262188 CENPQQ7L2Z9 268 aaPredicted RBP34.12■■■■□ 3.05
SMARCD3-201ENST00000262188 ANKRD31Q8N7Z5 1873 aa34.12■■■■□ 3.05
SMARCD3-201ENST00000262188 IFIT5Q13325 482 aaKnown RBP34.11■■■■□ 3.05
SMARCD3-201ENST00000262188 CCDC152Q4G0S7 254 aa34.11■■■■□ 3.05
SMARCD3-201ENST00000262188 SF3B3Q15393 1217 aaKnown RBP34.1■■■■□ 3.05
SMARCD3-201ENST00000262188 HSP90B1P14625 803 aaKnown RBP34.09■■■■□ 3.05
SMARCD3-201ENST00000262188 SMC5Q8IY18 1101 aa34.09■■■■□ 3.05
SMARCD3-201ENST00000262188 PUS3Q9BZE2 481 aaKnown RBP34.09■■■■□ 3.05
SMARCD3-201ENST00000262188 ANKRD18BA2A2Z9 1011 aa34.07■■■■□ 3.04
SMARCD3-201ENST00000262188 SMARCA5O60264 1052 aaPredicted RBP34.07■■■■□ 3.04
SMARCD3-201ENST00000262188 LRRC24Q50LG9 513 aa34.06■■■■□ 3.04
SMARCD3-201ENST00000262188 TAF7LQ5H9L4 462 aa34.06■■■■□ 3.04
SMARCD3-201ENST00000262188 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP34.06■■■■□ 3.04
SMARCD3-201ENST00000262188 SLC51AQ86UW1 340 aa34.05■■■■□ 3.04
SMARCD3-201ENST00000262188 COPRSQ9NQ92 184 aa34.05■■■■□ 3.04
SMARCD3-201ENST00000262188 BRIP1Q9BX63 1249 aa34.05■■■■□ 3.04
SMARCD3-201ENST00000262188 OS9Q13438 667 aaPredicted RBP34.04■■■■□ 3.04
SMARCD3-201ENST00000262188 ANKRD45Q5TZF3 282 aa34.04■■■■□ 3.04
SMARCD3-201ENST00000262188 CELF1Q92879 486 aaKnown RBP34.04■■■■□ 3.04
SMARCD3-201ENST00000262188 GCC1Q96CN9 775 aa34.04■■■■□ 3.04
SMARCD3-201ENST00000262188 EIF5BO60841 1220 aaKnown RBP34.03■■■■□ 3.04
SMARCD3-201ENST00000262188 PDZRN3Q9UPQ7 1066 aa34.03■■■■□ 3.04
SMARCD3-201ENST00000262188 NOP58Q9Y2X3 529 aaKnown RBP34.03■■■■□ 3.04
SMARCD3-201ENST00000262188 RIC1Q4ADV7 1423 aa34.03■■■■□ 3.04
SMARCD3-201ENST00000262188 SPEF2Q9C093 1822 aa34.02■■■■□ 3.04
SMARCD3-201ENST00000262188 SGIP1Q9BQI5 828 aa34.02■■■■□ 3.04
SMARCD3-201ENST00000262188 PTGER2P43116 358 aa34.02■■■■□ 3.04
SMARCD3-201ENST00000262188 CRY2Q49AN0 593 aa34.02■■■■□ 3.04
SMARCD3-201ENST00000262188 POLD1P28340 1107 aa34.01■■■■□ 3.03
SMARCD3-201ENST00000262188 RTL9Q8NET4 1388 aa34.01■■■■□ 3.03
SMARCD3-201ENST00000262188 COL11A2P13942 1736 aaPredicted RBP34■■■■□ 3.03
SMARCD3-201ENST00000262188 SOCS7O14512 581 aa34■■■■□ 3.03
SMARCD3-201ENST00000262188 G3BP1Q13283 466 aaKnown RBP eCLIP34■■■■□ 3.03
SMARCD3-201ENST00000262188 ATG9AQ7Z3C6 839 aa34■■■■□ 3.03
SMARCD3-201ENST00000262188 RPGRQ92834 1020 aaKnown RBP34■■■■□ 3.03
SMARCD3-201ENST00000262188 LNPKQ9C0E8 428 aa34■■■■□ 3.03
SMARCD3-201ENST00000262188 IL1RAPL2Q9NP60 686 aa34■■■■□ 3.03
SMARCD3-201ENST00000262188 SASH1O94885 1247 aa34■■■■□ 3.03
SMARCD3-201ENST00000262188 CHRNA5P30532 468 aa34■■■■□ 3.03
SMARCD3-201ENST00000262188 KLRG2A4D1S0 409 aaPredicted RBP33.99■■■■□ 3.03
SMARCD3-201ENST00000262188 LDHAL6AQ6ZMR3 332 aa33.99■■■■□ 3.03
SMARCD3-201ENST00000262188 DDX46Q7L014 1031 aaKnown RBP33.99■■■■□ 3.03
SMARCD3-201ENST00000262188 SRCAPQ6ZRS2 3230 aa33.98■■■■□ 3.03
SMARCD3-201ENST00000262188 EYA2O00167 538 aa33.98■■■■□ 3.03
SMARCD3-201ENST00000262188 C10orf71Q711Q0 1435 aa33.98■■■■□ 3.03
SMARCD3-201ENST00000262188 NUCB1Q02818 461 aa33.97■■■■□ 3.03
SMARCD3-201ENST00000262188 RHPN1Q8TCX5 695 aa33.97■■■■□ 3.03
SMARCD3-201ENST00000262188 GOLGB1Q14789 3259 aaKnown RBP33.97■■■■□ 3.03
SMARCD3-201ENST00000262188 PDE6BP35913 854 aa33.96■■■■□ 3.03
SMARCD3-201ENST00000262188 C2CD5Q86YS7 1000 aa33.96■■■■□ 3.03
SMARCD3-201ENST00000262188 C16orf71Q8IYS4 520 aaPredicted RBP33.96■■■■□ 3.03
SMARCD3-201ENST00000262188 CNNM1Q9NRU3 951 aa33.96■■■■□ 3.03
SMARCD3-201ENST00000262188 PPP1R1BQ9UD71 204 aaPredicted RBP33.96■■■■□ 3.03
SMARCD3-201ENST00000262188 SRGNP10124 158 aa33.96■■■■□ 3.03
SMARCD3-201ENST00000262188 CDC5LQ99459 802 aaKnown RBP33.96■■■■□ 3.03
SMARCD3-201ENST00000262188 TFCP2Q12800 502 aa33.95■■■■□ 3.03
SMARCD3-201ENST00000262188 ANKRD18AQ8IVF6 992 aa33.95■■■■□ 3.03
SMARCD3-201ENST00000262188 KLHL34Q8N239 644 aa33.95■■■■□ 3.03
SMARCD3-201ENST00000262188 LRRCC1Q9C099 1032 aa33.95■■■■□ 3.03
SMARCD3-201ENST00000262188 CHD1LQ86WJ1 897 aa33.94■■■■□ 3.02
SMARCD3-201ENST00000262188 MPHOSPH8Q99549 860 aa33.94■■■■□ 3.02
SMARCD3-201ENST00000262188 IGHMBP2P38935 993 aaKnown RBP33.94■■■■□ 3.02
SMARCD3-201ENST00000262188 HELBQ8NG08 1087 aaPredicted RBP33.94■■■■□ 3.02
SMARCD3-201ENST00000262188 RIPOR2Q9Y4F9 1068 aa33.94■■■■□ 3.02
SMARCD3-201ENST00000262188 LRP5O75197 1615 aa33.94■■■■□ 3.02
SMARCD3-201ENST00000262188 RPS8P62241 208 aaKnown RBP33.93■■■■□ 3.02
SMARCD3-201ENST00000262188 RAB11FIP3O75154 756 aa33.92■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms