RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 LMNB1P20700 586 aa16.37■□□□□ 0.21
SLIRP-201ENST00000238688 ST5P78524 1137 aa16.37■□□□□ 0.21
SLIRP-201ENST00000238688 ATP8B2P98198 1209 aa16.37■□□□□ 0.21
SLIRP-201ENST00000238688 MTX1Q13505 466 aa16.37■□□□□ 0.21
SLIRP-201ENST00000238688 PLBD2Q8NHP8 589 aa16.37■□□□□ 0.21
SLIRP-201ENST00000238688 C7orf43Q8WVR3 580 aa16.37■□□□□ 0.21
SLIRP-201ENST00000238688 MAP3K2Q9Y2U5 619 aa16.37■□□□□ 0.21
SLIRP-201ENST00000238688 HSPA6P17066 643 aa16.36■□□□□ 0.21
SLIRP-201ENST00000238688 PROSER3Q2NL68 480 aa16.36■□□□□ 0.21
SLIRP-201ENST00000238688 HSP90AB4PQ58FF6 505 aa16.36■□□□□ 0.21
SLIRP-201ENST00000238688 ANKRD13DQ6ZTN6 518 aa16.36■□□□□ 0.21
SLIRP-201ENST00000238688 MASTLQ96GX5 879 aa16.36■□□□□ 0.21
SLIRP-201ENST00000238688 METTL22Q9BUU2 404 aaPredicted RBP16.36■□□□□ 0.21
SLIRP-201ENST00000238688 ZNF219Q9P2Y4 722 aaPredicted RBP16.36■□□□□ 0.21
SLIRP-201ENST00000238688 FAM177BA6PVY3 158 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 TOMM70O94826 608 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 RGS3P49796 1198 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 PRPF40BQ6NWY9 871 aaKnown RBP16.35■□□□□ 0.21
SLIRP-201ENST00000238688 TPTE2Q6XPS3 522 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 RIC3Q7Z5B4 369 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 CNKSR1Q969H4 720 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 UBN2Q6ZU65 1347 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 ZC3H4Q9UPT8 1303 aaKnown RBP16.35■□□□□ 0.21
SLIRP-201ENST00000238688 ANKRD36CQ5JPF3 1778 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 ABCC12Q96J65 1359 aa16.35■□□□□ 0.21
SLIRP-201ENST00000238688 ANXA1P04083 346 aa16.34■□□□□ 0.21
SLIRP-201ENST00000238688 ZNF34Q8IZ26 560 aa16.34■□□□□ 0.21
SLIRP-201ENST00000238688 SSH3Q8TE77 659 aa16.34■□□□□ 0.21
SLIRP-201ENST00000238688 ZBTB3Q9H5J0 574 aa16.34■□□□□ 0.21
SLIRP-201ENST00000238688 C1orf115Q9H7X2 142 aa16.34■□□□□ 0.21
SLIRP-201ENST00000238688 LTBP3Q9NS15 1303 aa16.34■□□□□ 0.21
SLIRP-201ENST00000238688 GRM8O00222 908 aa16.33■□□□□ 0.2
SLIRP-201ENST00000238688 NPHP1O15259 732 aa16.33■□□□□ 0.2
SLIRP-201ENST00000238688 RAB11FIP3O75154 756 aa16.33■□□□□ 0.2
SLIRP-201ENST00000238688 COPS6Q7L5N1 327 aa16.33■□□□□ 0.2
SLIRP-201ENST00000238688 NUTM1Q86Y26 1132 aa16.33■□□□□ 0.2
SLIRP-201ENST00000238688 XAGE3Q8WTP9 111 aa16.33■□□□□ 0.2
SLIRP-201ENST00000238688 RRAGCQ9HB90 399 aa16.33■□□□□ 0.2
SLIRP-201ENST00000238688 C9orf78Q9NZ63 289 aaPredicted RBP16.33■□□□□ 0.2
SLIRP-201ENST00000238688 POTECB2RU33 542 aa16.32■□□□□ 0.2
SLIRP-201ENST00000238688 NPR1P16066 1061 aa16.32■□□□□ 0.2
SLIRP-201ENST00000238688 BMP2KLQ5H9B9 411 aa16.32■□□□□ 0.2
SLIRP-201ENST00000238688 SUSD4Q5VX71 490 aa16.32■□□□□ 0.2
SLIRP-201ENST00000238688 GIGYF2Q6Y7W6 1299 aaKnown RBP16.32■□□□□ 0.2
SLIRP-201ENST00000238688 SNED1Q8TER0 1413 aa16.32■□□□□ 0.2
SLIRP-201ENST00000238688 WDR90Q96KV7 1748 aa16.32■□□□□ 0.2
SLIRP-201ENST00000238688 LAMB2P55268 1798 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 GLTPD2A6NH11 291 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 GPTP24298 496 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 POLA2Q14181 598 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 CRY2Q49AN0 593 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 ERFEQ4G0M1 354 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 ANKRD45Q5TZF3 282 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 OLFM4Q6UX06 510 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 KIF6Q6ZMV9 814 aa16.31■□□□□ 0.2
SLIRP-201ENST00000238688 LRRFIP2Q9Y608 721 aaKnown RBP16.31■□□□□ 0.2
SLIRP-201ENST00000238688 RIC1Q4ADV7 1423 aa16.3■□□□□ 0.2
SLIRP-201ENST00000238688 NEURL1BA8MQ27 555 aa16.3■□□□□ 0.2
SLIRP-201ENST00000238688 NTSR2O95665 410 aa16.3■□□□□ 0.2
SLIRP-201ENST00000238688 TRIM28Q13263 835 aaKnown RBP16.3■□□□□ 0.2
SLIRP-201ENST00000238688 C8orf34Q49A92 452 aa16.3■□□□□ 0.2
SLIRP-201ENST00000238688 RBM46Q8TBY0 533 aaKnown RBP16.3■□□□□ 0.2
SLIRP-201ENST00000238688 TAOK3Q9H2K8 898 aa16.3■□□□□ 0.2
SLIRP-201ENST00000238688 GCKRQ14397 625 aa16.29■□□□□ 0.2
SLIRP-201ENST00000238688 HSP90AB3PQ58FF7 597 aa16.29■□□□□ 0.2
SLIRP-201ENST00000238688 C3orf67Q6ZVT6 689 aa16.29■□□□□ 0.2
SLIRP-201ENST00000238688 ERC1Q8IUD2 1116 aa16.29■□□□□ 0.2
SLIRP-201ENST00000238688 NYXQ9GZU5 481 aa16.29■□□□□ 0.2
SLIRP-201ENST00000238688 AOX1Q06278 1338 aa16.28■□□□□ 0.2
SLIRP-201ENST00000238688 ANP32AP39687 249 aaKnown RBP16.28■□□□□ 0.2
SLIRP-201ENST00000238688 SLC51AQ86UW1 340 aa16.28■□□□□ 0.2
SLIRP-201ENST00000238688 CCDC191Q8NCU4 936 aa16.28■□□□□ 0.2
SLIRP-201ENST00000238688 LNPKQ9C0E8 428 aa16.28■□□□□ 0.2
SLIRP-201ENST00000238688 OSBPL3Q9H4L5 887 aa16.28■□□□□ 0.2
SLIRP-201ENST00000238688 NOP58Q9Y2X3 529 aaKnown RBP16.28■□□□□ 0.2
SLIRP-201ENST00000238688 TAF1P21675 1872 aa16.28■□□□□ 0.2
SLIRP-201ENST00000238688 IGKV5-2P06315 115 aa16.27■□□□□ 0.2
SLIRP-201ENST00000238688 HOXA10P31260 410 aaPredicted RBP16.27■□□□□ 0.2
SLIRP-201ENST00000238688 AIMP1Q12904 312 aaKnown RBP16.27■□□□□ 0.2
SLIRP-201ENST00000238688 SOGA3Q5TF21 947 aa16.27■□□□□ 0.2
SLIRP-201ENST00000238688 LRRCC1Q9C099 1032 aa16.27■□□□□ 0.2
SLIRP-201ENST00000238688 UPF2Q9HAU5 1272 aaKnown RBP16.27■□□□□ 0.2
SLIRP-201ENST00000238688 NBPF7P0C2Y1 421 aaPredicted RBP16.26■□□□□ 0.19
SLIRP-201ENST00000238688 GTF2E1P29083 439 aaPredicted RBP16.26■□□□□ 0.19
SLIRP-201ENST00000238688 CCDC93Q567U6 631 aa16.26■□□□□ 0.19
SLIRP-201ENST00000238688 SRGAP3O43295 1099 aa16.25■□□□□ 0.19
SLIRP-201ENST00000238688 ALDH1B1P30837 517 aa16.25■□□□□ 0.19
SLIRP-201ENST00000238688 PARP10Q53GL7 1025 aa16.25■□□□□ 0.19
SLIRP-201ENST00000238688 SLC10A5Q5PT55 438 aa16.25■□□□□ 0.19
SLIRP-201ENST00000238688 PPP1R42Q7Z4L9 355 aa16.25■□□□□ 0.19
SLIRP-201ENST00000238688 DNAJC5GQ8N7S2 189 aa16.25■□□□□ 0.19
SLIRP-201ENST00000238688 KIF1BPQ96EK5 621 aa16.25■□□□□ 0.19
SLIRP-201ENST00000238688 COL4A5P29400 1685 aa16.24■□□□□ 0.19
SLIRP-201ENST00000238688 VEGFAP15692 232 aaPredicted RBP16.24■□□□□ 0.19
SLIRP-201ENST00000238688 FKBP4Q02790 459 aaKnown RBP eCLIP16.24■□□□□ 0.19
SLIRP-201ENST00000238688 FSTL1Q12841 308 aa16.24■□□□□ 0.19
SLIRP-201ENST00000238688 SYNE4Q8N205 404 aa16.24■□□□□ 0.19
SLIRP-201ENST00000238688 MYD88Q99836 296 aa16.24■□□□□ 0.19
SLIRP-201ENST00000238688 CWC25Q9NXE8 425 aaPredicted RBP16.24■□□□□ 0.19
SLIRP-201ENST00000238688 DDX60Q8IY21 1712 aaKnown RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms