RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 COX7A2P14406 83 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 PTNP21246 168 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 GABRR1P24046 479 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 FGF9P31371 208 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 IL2RGP31785 369 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 CLK2P49760 499 aaKnown RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 MMP15P51511 669 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 DCDP81605 110 aaKnown RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 HTRA3P83110 453 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 FOXK1P85037 733 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 MELKQ14680 651 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 HERPUD1Q15011 391 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 GXYLT1Q4G148 440 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF789Q5FWF6 425 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 SOHLH1Q5JUK2 328 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 OR2G6Q5TZ20 316 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 PRAMEF8Q5VWM4 474 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 PRAMEF7Q5VXH5 474 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 SMARCD3Q6STE5 483 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 C1orf87Q8N0U7 546 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 EID2Q8N6I1 236 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 EXD3Q8N9H8 876 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 OR5L1Q8NGL2 311 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 SLC7A13Q8TCU3 470 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 GEMIN6Q8WXD5 167 aaKnown RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 WBP1Q96G27 269 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 TEX37Q96LM6 180 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF75AQ96N20 296 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 NSUN5Q96P11 429 aaKnown RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 DPH2Q9BQC3 489 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 GPR87Q9BY21 358 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 APOBEC3GQ9HC16 384 aaKnown RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 HRASLSQ9HDD0 168 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 THSD1Q9NS62 852 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 TDP1Q9NUW8 608 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 PRMT7Q9NVM4 692 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 SLC25A13Q9UJS0 675 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 ANGPT4Q9Y264 503 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 RAI2Q9Y5P3 530 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 POMT1Q9Y6A1 747 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 LAMB1P07942 1786 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 A0A0B4J2A0 478 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF320A2RRD8 509 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 EMC8O43402 210 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 GALR3O60755 368 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 CLDN9O95484 217 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 CLEC3BP05452 202 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 CHRM4P08173 479 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 MMP2P08253 660 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 IQCF3P0C7M6 154 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 TMIGD3P0DMS9 266 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 AKT2P31751 481 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 TAGLN2P37802 199 aaKnown RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 SNCAP37840 140 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 PMELP40967 661 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 RAB7AP51149 207 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 ZP1P60852 638 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 RAP1BP61224 184 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 RPS14P62263 151 aaKnown RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 SLC6A3Q01959 620 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM69Q5SWH9 247 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 SDHAF4Q5VUM1 108 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 PRR27Q6MZM9 219 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 WDR73Q6P4I2 378 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 CBLL1Q75N03 491 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 CEACAM19Q7Z692 300 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 PTOV1Q86YD1 416 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 GID4Q8IVV7 300 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 OR2D3Q8NGH3 330 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 OR52N4Q8NGI2 321 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 NUBPLQ8TB37 319 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF596Q8TC21 504 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 DUSP19Q8WTR2 217 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 CCDC74AQ96AQ1 378 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 NECAB3Q96P71 396 aaPredicted RBP5.34□□□□□ -1.55
SCN1A-216ENST00000637968 DPEP2Q9H4A9 486 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 SHPKQ9UHJ6 478 aa5.34□□□□□ -1.55
SCN1A-216ENST00000637968 CITO14578 2027 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 SYT7O43581 403 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 MTX2O75431 263 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 TOX4O94842 621 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 SOD1P00441 154 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 MMP7P09237 267 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-216ENST00000637968 BCKDHBP21953 392 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 GRK4P32298 578 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 EFNA5P52803 228 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 PNLIPRP2P54317 469 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 DLK1P80370 383 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 FABP5Q01469 135 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 TPBGQ13641 420 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 MAPK14Q16539 360 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 GOLGA7BQ2TAP0 167 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 SFXN4Q6P4A7 337 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 VWA1Q6PCB0 445 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 SLC27A1Q6PCB7 646 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 FAM83HQ6ZRV2 1179 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM130Q8N3G9 435 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 C2CD4AQ8NCU7 369 aaPredicted RBP5.34□□□□□ -1.56
SCN1A-216ENST00000637968 OR9Q2Q8NGE9 314 aa5.34□□□□□ -1.56
SCN1A-216ENST00000637968 OR52B6Q8NGF0 335 aa5.34□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms