RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 SYNGR2O43760 224 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 ICMTO60725 284 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 AHRP35869 848 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 SLC6A12P48065 614 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 NUBP1P53384 320 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 HADHBP55084 474 aaKnown RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 DSC2Q02487 901 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 MSS51Q4VC12 460 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 C6orf132Q5T0Z8 1188 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 SDHAF4Q5VUM1 108 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 ZNF626Q68DY1 528 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 KIAA0930Q6ICG6 404 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 FIGLAQ6QHK4 219 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 LCLAT1Q6UWP7 414 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 C1orf52Q8N6N3 182 aaKnown RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 NELL2Q99435 816 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 C14orf119Q9NWQ9 140 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 CXXC1Q9P0U4 656 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 SHPKQ9UHJ6 478 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 OAZ3Q9UMX2 235 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 SLC22A13Q9Y226 551 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 NWD1Q149M9 1564 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 SLC5A10A0PJK1 596 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 A6NL46 340 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 PIRO00625 290 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 HPGDSO60760 199 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 RFPL2O75678 378 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 SOX14O95416 240 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 MT-ND1P03886 318 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 FOLR1P15328 257 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 TAGLN2P37802 199 aaKnown RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 PCBP2Q15366 365 aaKnown RBP eCLIP5.65□□□□□ -1.51e-9■■■■■ 28.3
SCN1A-212ENST00000636194 LTB4RQ15722 352 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 FAM110CQ1W6H9 321 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 LYPD8Q6UX82 237 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 VWA5B2Q8N398 1253 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 FAM174AQ8TBP5 190 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 RASD2Q96D21 266 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 RTP4Q96DX8 246 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 ZNF416Q9BWM5 594 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 HRH4Q9H3N8 390 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 TMEM231Q9H6L2 316 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 KCND3Q9UK17 655 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 F5H697 171 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 POP7O75817 140 aaKnown RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 PYCR1P32322 319 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 PM20D1Q6GTS8 502 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 RFPL4BQ6ZWI9 263 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 ZNF765Q7L2R6 523 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 METTL27Q8N6F8 245 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 TEX29Q8N6K0 151 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 SMAP2Q8WU79 429 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 HAS1Q92839 578 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 ARHGDIGQ99819 225 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 NUDT22Q9BRQ3 303 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 C20orf85Q9H1P6 137 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 AKTIPQ9H8T0 292 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 HEYLQ9NQ87 328 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-212ENST00000636194 FAM198AQ9UFP1 575 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 MMACHCQ9Y4U1 282 aa5.65□□□□□ -1.5
SCN1A-212ENST00000636194 SLIT1O75093 1534 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 NSG1A0A0A6YYJ2 146 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 DNASE2O00115 360 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-212ENST00000636194 RAB3DO95716 219 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 TYRP14679 529 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 DAOAP59103 153 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 ZNF280AP59817 542 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-212ENST00000636194 CTXN1P60606 82 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 UBE2IP63279 158 aaKnown RBP5.65□□□□□ -1.51
SCN1A-212ENST00000636194 HACD4Q5VWC8 232 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 FDX2Q6P4F2 183 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 DCBLD1Q8N8Z6 715 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 OR8J1Q8NGP2 316 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 OR10J5Q8NHC4 309 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 INPP4AQ96PE3 977 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-212ENST00000636194 SLA2Q9H6Q3 261 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 SSU72Q9NP77 194 aaKnown RBP5.65□□□□□ -1.51
SCN1A-212ENST00000636194 DMRT3Q9NQL9 472 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 LYRM2Q9NU23 88 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-212ENST00000636194 PGPEP1Q9NXJ5 209 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 EHFQ9NZC4 300 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 VAPAQ9P0L0 249 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 MS4A18H0YCH9 400 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 SLC43A1O75387 559 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 EDN1P05305 212 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 ANKRD34CP0C6C1 535 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 HKR1P10072 659 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 SLC7A9P82251 487 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 HTR4Q13639 388 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 MS4A18Q3C1V0 323 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 MOGAT2Q3SYC2 334 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 C17orf107Q6ZR85 190 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 GDPD1Q8N9F7 314 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 DTX3Q8N9I9 347 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 OR56B1Q8NGI3 324 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 OR52E2Q8NGJ4 325 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 DDOQ99489 341 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 GAL3ST2Q9H3Q3 398 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 UFSP2Q9NUQ7 469 aa5.65□□□□□ -1.51
SCN1A-212ENST00000636194 MYLKQ15746 1914 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 101.3 ms