RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 P2RY14Q15391 338 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 TOMM34Q15785 309 aaPredicted RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 TMEM44Q2T9K0 475 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 PYDC2Q56P42 97 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 CD200R1LQ6Q8B3 271 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 GPR135Q8IZ08 494 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 C7orf57Q8NEG2 295 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 OR52N1Q8NH53 320 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 THAP3Q8WTV1 239 aaPredicted RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 SRRQ9GZT4 340 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 CTSFQ9UBX1 484 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 EML5Q05BV3 1969 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 IGKV1D-42A0A075B6H8 117 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 A0A1W2PRG6 482 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 CPED1A4D0V7 1026 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 FITM1A5D6W6 292 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 OR6C68A6NDL8 312 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ELOA3DA6NLF2 546 aaPredicted RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 H7C1C5 153 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SCDO00767 359 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 GIMD1P0DJR0 217 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 IL7P13232 177 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SLC2A5P22732 501 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 FGF9P31371 208 aaPredicted RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 OR10A3P58181 314 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 STARD6P59095 220 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 LCN6P62502 163 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 GALEQ14376 348 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ELOA3BQ3SY89 546 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 DDI2Q5TDH0 399 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ARHGAP40Q5TG30 622 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 OR5M10Q6IEU7 315 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SPEM1Q8N4L4 309 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ELOA3Q8NG57 546 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ZNF563Q8TA94 476 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 FAM174AQ8TBP5 190 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 DNAJA4Q8WW22 397 aaPredicted RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 ELF4Q99607 663 aaPredicted RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 NDC1Q9BTX1 674 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SP140LQ9H930 580 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 UCK1Q9HA47 277 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 PRODH2Q9UF12 536 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 CHRNA9Q9UGM1 479 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 IDSB3KWA1 339 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 NDUFB2O95178 105 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 NUDT14O95848 222 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 DDAH2O95865 285 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 S100A1P23297 94 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 ITPKBP27987 946 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 CXCL12P48061 93 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 SERTAD2Q14140 314 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 ARMC4Q5T2S8 1044 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 IDNKQ5T6J7 187 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 C1QL3Q5VWW1 255 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 RPL13AP3Q6NVV1 102 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 MARCH3Q86UD3 253 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 MINDY2Q8NBR6 621 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 ORAI1Q96D31 301 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 Q96M85 177 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 RNF32Q9H0A6 362 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 MMP28Q9H239 520 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 UBQLN4Q9NRR5 601 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 FGF21Q9NSA1 209 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 CLEC4AQ9UMR7 237 aa9.71□□□□□ -0.85
CUX1-221ENST00000622516 C2orf72A6NCS6 295 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 POLR1CO15160 346 aaPredicted RBP9.71□□□□□ -0.86
CUX1-221ENST00000622516 HCRTR2O43614 444 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 DUX1O43812 170 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 SELENOFO60613 162 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 UBL4AP11441 157 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 PSMB10P40306 273 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 NKX2-5P52952 324 aaPredicted RBP9.71□□□□□ -0.86
CUX1-221ENST00000622516 C4orf46Q504U0 113 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 PRR23CQ6ZRP0 262 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 PLXDC1Q8IUK5 500 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 C9orf40Q8IXQ3 194 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 ZNF721Q8TF20 911 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 KTI12Q96EK9 354 aaPredicted RBP9.71□□□□□ -0.86
CUX1-221ENST00000622516 ATF6BQ99941 703 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 ERVMER34-1Q9H9K5 563 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 CPNE5Q9HCH3 593 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 ISYNA1Q9NPH2 558 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 TRIM36Q9NQ86 728 aa9.71□□□□□ -0.86
CUX1-221ENST00000622516 A0A087WV48 116 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 TEX13CA0A0J9YWL9 993 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 NUDT21O43809 227 aaKnown RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 RORAP35398 523 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 RPS27P42677 84 aaKnown RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 RBM34P42696 430 aaKnown RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 MAGEB1P43366 347 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 RFX2P48378 723 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 GPR143P51810 404 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 DEFA1P59665 94 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 DEFA3P59666 94 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 CDC20Q12834 499 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 GLYR1Q49A26 553 aaPredicted RBP9.7□□□□□ -0.86
CUX1-221ENST00000622516 FAM69BQ5VUD6 431 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 CNIH2Q6PI25 160 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 CEACAM19Q7Z692 300 aa9.7□□□□□ -0.86
CUX1-221ENST00000622516 SLC38A9Q8NBW4 561 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms