RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CCM2LQ9NUG4 571 aaPredicted RBP17.68■□□□□ 0.42
UPF3A-211ENST00000618700 PAQR5Q9NXK6 330 aaPredicted RBP17.68■□□□□ 0.42
UPF3A-211ENST00000618700 CLCF1Q9UBD9 225 aa17.68■□□□□ 0.42
UPF3A-211ENST00000618700 AURKCQ9UQB9 309 aa17.68■□□□□ 0.42
UPF3A-211ENST00000618700 MPDZO75970 2070 aa17.68■□□□□ 0.42
UPF3A-211ENST00000618700 UBR5O95071 2799 aaPredicted RBP17.67■□□□□ 0.42
UPF3A-211ENST00000618700 RELNP78509 3460 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 CXCL13O43927 109 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 PMS2P2O95744 297 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 H1F0P07305 194 aaKnown RBP17.67■□□□□ 0.42
UPF3A-211ENST00000618700 IMPDH2P12268 514 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 PTNP21246 168 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 IDUAP35475 653 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 DIO1P49895 249 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 CASP6P55212 293 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 RAC3P60763 192 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 SF3B4Q15427 424 aaKnown RBP eCLIP17.67■□□□□ 0.422e-10■■■■■ 27.3
UPF3A-211ENST00000618700 PDSS1Q5T2R2 415 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 C1orf185Q5T7R7 199 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 NSUN5P2Q63ZY6 315 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 P3H2Q8IVL5 708 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 TMEM255BQ8WV15 326 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 OSTF1Q92882 214 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 FUZQ9BT04 418 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 SLC19A3Q9BZV2 496 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 TRAPPC4Q9Y296 219 aa17.67■□□□□ 0.42
UPF3A-211ENST00000618700 ESPL1Q14674 2120 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 TRAV36DV7A0A075B6V5 113 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 TRGV8A0A0C4DH27 118 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 CD8B2A6NJW9 211 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 LIPT2A6NK58 231 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 KDM4EB2RXH2 506 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-211ENST00000618700 DNPH1O43598 174 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 FKBP6O75344 327 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 UGT2B15P54855 530 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 CARD18P57730 90 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 CSNK2A1P68400 391 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-211ENST00000618700 ZNF239Q16600 458 aaKnown RBP17.66■□□□□ 0.42
UPF3A-211ENST00000618700 EIF2S3LQ2VIR3 472 aaKnown RBP17.66■□□□□ 0.42
UPF3A-211ENST00000618700 TTC33Q6PID6 262 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-211ENST00000618700 C3P1Q6ZMU1 363 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 RPRMLQ8N4K4 120 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 OR6S1Q8NH40 331 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 SLC7A13Q8TCU3 470 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 TMEM239Q8WW34 195 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 CPNE4Q96A23 557 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-211ENST00000618700 DNAJA3Q96EY1 480 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 HS6ST2Q96MM7 605 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 DMRTA2Q96SC8 542 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 EPYCQ99645 322 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 DENND2DQ9H6A0 471 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-211ENST00000618700 CALHM2Q9HA72 323 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 MEPEQ9NQ76 525 aaPredicted RBP17.66■□□□□ 0.42
UPF3A-211ENST00000618700 ALKBH4Q9NXW9 302 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 ZNF175Q9Y473 711 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 TESMINQ9Y4I5 508 aa17.66■□□□□ 0.42
UPF3A-211ENST00000618700 GCN1Q92616 2671 aaKnown RBP17.65■□□□□ 0.42
UPF3A-211ENST00000618700 FTCDNL1E5RQL4 147 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 E9PLN8 166 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 SULT2B1O00204 365 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 AHSA1O95433 338 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 IGF2P01344 180 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 RRM2P31350 389 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 SMIM11AP58511 58 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 SPIBQ01892 262 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 FAM69AQ5T7M9 428 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 RPTNQ6XPR3 784 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 SEM1Q6ZVN7 128 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 CHMP1BQ7LBR1 199 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 MFSD8Q8NHS3 518 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 ACOT11Q8WXI4 607 aaPredicted RBP17.65■□□□□ 0.42
UPF3A-211ENST00000618700 TAAR8Q969N4 342 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 TRIB1Q96RU8 372 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 VKORC1Q9BQB6 163 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 TIGARQ9NQ88 270 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 ARMC1Q9NVT9 282 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 SH3BGRL2Q9UJC5 107 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 KIAA1549Q9HCM3 1950 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 BAHCC1Q9P281 2608 aa17.65■□□□□ 0.42
UPF3A-211ENST00000618700 HIVEP3Q5T1R4 2406 aa17.64■□□□□ 0.42
UPF3A-211ENST00000618700 MYO18BQ8IUG5 2567 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 A0A087WUU8 490 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 TRBV4-1A0A0J9YWV2 114 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 MBD3L4A6NDZ8 208 aaPredicted RBP17.64■□□□□ 0.41
UPF3A-211ENST00000618700 MBD3L3A6NE82 208 aaPredicted RBP17.64■□□□□ 0.41
UPF3A-211ENST00000618700 MBD3L5A6NJ08 208 aaPredicted RBP17.64■□□□□ 0.41
UPF3A-211ENST00000618700 ANKRD65E5RJM6 399 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 RPS5P46782 204 aaKnown RBP17.64■□□□□ 0.41
UPF3A-211ENST00000618700 LIMS1P48059 325 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 PON3Q15166 354 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 SGCBQ16585 318 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 FGD3Q5JSP0 725 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 OR2T5Q6IEZ7 315 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 PLXDC2Q6UX71 529 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 B3GNT6Q6ZMB0 384 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 MARVELD2Q8N4S9 558 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 OR2T29Q8NH02 315 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 PFN4Q8NHR9 129 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 MBD3L2Q8NHZ7 208 aaPredicted RBP17.64■□□□□ 0.41
UPF3A-211ENST00000618700 PRR7Q8TB68 274 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms