RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 LOXP28300 417 aaPredicted RBP5.04□□□□□ -1.6
CPNE3-208ENST00000614678 RAC3P60763 192 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 CYLC2Q14093 348 aaPredicted RBP5.04□□□□□ -1.6
CPNE3-208ENST00000614678 OR1Q1Q15612 314 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 STK11Q15831 433 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 CDC20BQ86Y33 519 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 GABRG1Q8N1C3 465 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 FITM2Q8N6M3 262 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 PFN4Q8NHR9 129 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 SPOCK3Q9BQ16 436 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 ZNF559Q9BR84 538 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 PCDHAC1Q9H158 963 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 BCL2L10Q9HD36 194 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 CAPN7Q9Y6W3 813 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 NAV3Q8IVL0 2385 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 PRORSD1PA6NEY8 169 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 LIPT2A6NK58 231 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 DYNC1I1O14576 645 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 NPIPB7O75200 414 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 DNAJA1P31689 397 aaKnown RBP5.04□□□□□ -1.6
CPNE3-208ENST00000614678 PTGER4P35408 488 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 PPP1R8Q12972 351 aaKnown RBP5.04□□□□□ -1.6
CPNE3-208ENST00000614678 TAB1Q15750 504 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 VMACQ2NL98 169 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 SLC25A35Q3KQZ1 300 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 LIN52Q52LA3 116 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 TSPO2Q5TGU0 170 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 WFDC8Q8IUA0 241 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 ARMC8Q8IUR7 673 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 KIRREL3Q8IZU9 778 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 ADAMTS16Q8TE57 1224 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 PIK3IP1Q96FE7 263 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 TPD52L3Q96J77 140 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 ALKBH3Q96Q83 286 aaPredicted RBP5.04□□□□□ -1.6
CPNE3-208ENST00000614678 SMR3AQ99954 134 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 POLDIP3Q9BY77 421 aaKnown RBP5.04□□□□□ -1.6
CPNE3-208ENST00000614678 MCCC2Q9HCC0 563 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 PLSCR4Q9NRQ2 329 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 SLC7A10Q9NS82 523 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 MED29Q9NX70 200 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 B3GAT1Q9P2W7 334 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 MCTS1Q9ULC4 181 aaKnown RBP5.04□□□□□ -1.6
CPNE3-208ENST00000614678 PROCRQ9UNN8 238 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 TRIM33Q9UPN9 1127 aa5.04□□□□□ -1.6
CPNE3-208ENST00000614678 JMJD1CQ15652 2540 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 GMNCA6NCL1 334 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 A6NNC1 897 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 FTCDNL1E5RQL4 147 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 IMPA2O14732 288 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 FFAR1O14842 300 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 MT-ND1P03886 318 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 HRGP04196 525 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 EIF1P41567 113 aaKnown RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 IST1P53990 364 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 RPS3AP61247 264 aaKnown RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 FAPQ12884 760 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 FADDQ13158 208 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ENTPD8Q5MY95 495 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 RNF220Q5VTB9 566 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 C8orf82Q6P1X6 216 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 TBPL2Q6SJ96 375 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 MSANTD1Q6ZTZ1 278 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 OR52N5Q8NH56 324 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 TMEM255BQ8WV15 326 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ST8SIA1Q92185 356 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 GMPPAQ96IJ6 420 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 CLPTM1LQ96KA5 538 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 MED18Q9BUE0 208 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 SPATA9Q9BWV2 254 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ACTR6Q9GZN1 396 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 TMEM38AQ9H6F2 299 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 PLEKHF2Q9H8W4 249 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 MEPEQ9NQ76 525 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 RASSF1Q9NS23 344 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 SLC7A7Q9UM01 511 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 EVPLLA8MZ36 301 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 M0R082 166 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 CYTIPO60759 359 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 NDUFS7O75251 213 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 UPK3AO75631 287 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 PRKD3O94806 890 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 AGR2O95994 175 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ADH6P28332 368 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 POLR2HP52434 150 aaKnown RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 CTBP2P56545 445 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 RGS8P57771 180 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 PSPHP78330 225 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 SLC17A1Q14916 467 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 FBXL19-AS1Q494R0 122 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ALG10BQ5I7T1 473 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 OTUD3Q5T2D3 398 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 C1orf140Q5VVS0 124 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 METTL21CQ5VZV1 264 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 CARD17Q5XLA6 110 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 KLHL17Q6TDP4 642 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 DEF8Q6ZN54 512 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 LILRB1Q8NHL6 650 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ZNF417Q8TAU3 575 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ZNF587Q96SQ5 575 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ECSITQ9BQ95 431 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms