RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RPS5P46782 204 aaKnown RBP12.9□□□□□ -0.34
USP39-220ENST00000613444 PCYT1AP49585 367 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 TMEM44Q2T9K0 475 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 CASP12Q6UXS9 341 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 PTCHD4Q6ZW05 846 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 LNX2Q8N448 690 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 TCEANCQ8N8B7 351 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 BPIFB6Q8NFQ5 453 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 TSPAN14Q8NG11 270 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 OR2T33Q8NG76 320 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 OR8J1Q8NGP2 316 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 IL4I1Q96RQ9 567 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 GPR83Q9NYM4 423 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 ABI3Q9P2A4 366 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 POLHQ9Y253 713 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 SSUH2Q9Y2M2 353 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 PINLYPA6NC86 204 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 CDK2AP1O14519 115 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 ZNF208O43345 1280 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 ZIC3O60481 467 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 MPZL2O60487 215 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 BMP7P18075 431 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 MASP1P48740 699 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 FOXO1Q12778 655 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 OR1C1Q15619 314 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 GXYLT1Q4G148 440 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 TMEM201Q5SNT2 666 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 AGAP7PQ5VUJ5 663 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 C1orf140Q5VVS0 124 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 AGAP4Q96P64 663 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 RHNO1Q9BSD3 238 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 NANSQ9NR45 359 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 HIF3AQ9Y2N7 669 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 MSRB2Q9Y3D2 182 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 ALPK2Q86TB3 2170 aa12.89□□□□□ -0.35
USP39-220ENST00000613444 A0A087WZY1 265 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 SURF4O15260 269 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 SLC25A12O75746 678 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 CBR3O75828 277 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 HTR1AP08908 422 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 CNR1P21554 472 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 ADH6P28332 368 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 CASRP41180 1078 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 DSCR4P56555 118 aaPredicted RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 GPR85P60893 370 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 TOP3AQ13472 1001 aaPredicted RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 SLC25A30Q5SVS4 291 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 ZNF362Q5T0B9 420 aaPredicted RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 SLC43A2Q8N370 569 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 FAM26EQ8N5C1 309 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 LRRC75AQ8NAA5 344 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 MDS2Q8NDY4 140 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 OR5M1Q8NGP8 315 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 KCNE4Q8WWG9 221 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 ZBTB8AQ96BR9 441 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 ARL5BQ96KC2 179 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 UBL7Q96S82 380 aaPredicted RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 HES7Q9BYE0 225 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 DUSP21Q9H596 190 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 FKRPQ9H9S5 495 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 TIMMDC1Q9NPL8 285 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 PLCXD1Q9NUJ7 323 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 ZNF229Q9UJW7 825 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 FTCDNL1E5RQL4 147 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 DPP4P27487 766 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 UQCRC1P31930 480 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 EIF1P41567 113 aaKnown RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 MAP2K6P52564 334 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 GABARAPL2P60520 117 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 SLC35A2P78381 396 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 MFAP5Q13361 173 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 SNAPC1Q16533 368 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 FAM69AQ5T7M9 428 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 C5orf46Q6UWT4 87 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 BCDIN3DQ7Z5W3 292 aaKnown RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 GTPBP8Q8N3Z3 284 aaPredicted RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 ZNF248Q8NDW4 579 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 OR52L1Q8NGH7 329 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 SNIP1Q8TAD8 396 aaKnown RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 SLC39A7Q92504 469 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 DNAJA3Q96EY1 480 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 JSRP1Q96MG2 331 aaPredicted RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 RNF32Q9H0A6 362 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 TUBA8Q9NY65 449 aaPredicted RBP12.88□□□□□ -0.35
USP39-220ENST00000613444 MGAQ8IWI9 3026 aa12.88□□□□□ -0.35
USP39-220ENST00000613444 OR5H15A6NDH6 313 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 MCIDASD6RGH6 385 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 KLK10O43240 276 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 TLX2O43763 284 aaPredicted RBP12.87□□□□□ -0.35
USP39-220ENST00000613444 NDUFB2O95178 105 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 SLC2A10O95528 541 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 TFAP2AP05549 437 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 RFPL3SP0C7P2 107 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 TCEA1P23193 301 aaKnown RBP12.87□□□□□ -0.35
USP39-220ENST00000613444 GRK5P34947 590 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 OCLNQ16625 522 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 FDCSPQ8NFU4 85 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 OR6S1Q8NH40 331 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 MOSPD2Q8NHP6 518 aa12.87□□□□□ -0.35
USP39-220ENST00000613444 TMEM163Q8TC26 289 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms