RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 SLC9A8Q9Y2E8 581 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 PLEKHA6Q9Y2H5 1048 aa12.56□□□□□ -0.4
LIG1-218ENST00000599322 ZNF469Q96JG9 3925 aaPredicted RBP12.56□□□□□ -0.4
LIG1-218ENST00000599322 HEATR5AQ86XA9 2040 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 IGKV3D-15A0A087WSY6 115 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 CCT8L1PA6NM43 557 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 BBIP1A8MTZ0 92 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 OR2T1O43869 369 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 VAMP5O95183 116 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 HOXB9P17482 250 aaPredicted RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 AQP1P29972 269 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 ADSLP30566 484 aaPredicted RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 RGS8P57771 180 aaPredicted RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 GUCY1A3Q02108 690 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 CEACAM7Q14002 265 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 OR7A5Q15622 319 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 OTUD3Q5T2D3 398 aaPredicted RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 ABLIM2Q6H8Q1 611 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 DHRS4L2Q6PKH6 230 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 DLEU7Q6UYE1 221 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 BHLHA15Q7RTS1 189 aaPredicted RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 PATL1Q86TB9 770 aaKnown RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 GABRG1Q8N1C3 465 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 RASSF5Q8WWW0 418 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 PIGTQ969N2 578 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 SLC47A1Q96FL8 570 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 ZNF300Q96RE9 604 aaPredicted RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 ECSITQ9BQ95 431 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 CPPED1Q9BRF8 314 aaPredicted RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 SF3B5Q9BWJ5 86 aaKnown RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 ESRP2Q9H6T0 727 aaKnown RBP12.55□□□□□ -0.4
LIG1-218ENST00000599322 C12orf10Q9HB07 376 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 ZNF446Q9NWS9 450 aa12.55□□□□□ -0.4
LIG1-218ENST00000599322 NF1P21359 2839 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 ITPR3Q14573 2671 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 TRBV5-3A0A0A0MS03 114 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 ADAM11O75078 769 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 KRT33AO76009 404 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 PRG2P13727 222 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 CCKARP32238 428 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 MDH1P40925 334 aaKnown RBP12.54□□□□□ -0.4
LIG1-218ENST00000599322 SLC16A1P53985 500 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 TGFBR3Q03167 851 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 PLAURQ03405 335 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 STK11Q15831 433 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 TRMT5Q32P41 509 aaKnown RBP12.54□□□□□ -0.4
LIG1-218ENST00000599322 COQ5Q5HYK3 327 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 C1orf140Q5VVS0 124 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 FBXW9Q5XUX1 488 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 ULK3Q6PHR2 472 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 CASP12Q6UXS9 341 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 ABHD12BQ7Z5M8 362 aaPredicted RBP12.54□□□□□ -0.4
LIG1-218ENST00000599322 GPAT4Q86UL3 456 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 P2RY8Q86VZ1 359 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 S100PBPQ96BU1 408 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 EPYCQ99645 322 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 PIF1Q9H611 641 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 ZNF385DQ9H6B1 395 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 CCDC134Q9H6E4 229 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 PLEKHF2Q9H8W4 249 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 UBTD1Q9HAC8 227 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 ASB6Q9NWX5 421 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 ADPRHL2Q9NX46 363 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 KLHL14Q9P2G3 628 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 TESQ9UGI8 421 aaKnown RBP12.54□□□□□ -0.4
LIG1-218ENST00000599322 CAPN7Q9Y6W3 813 aa12.54□□□□□ -0.4
LIG1-218ENST00000599322 PRRC2AP48634 2157 aaKnown RBP12.53□□□□□ -0.4
LIG1-218ENST00000599322 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.53□□□□□ -0.4
LIG1-218ENST00000599322 LIPT2A6NK58 231 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 MRASO14807 208 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 ARHGEF9O43307 516 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 FRS3O43559 492 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 CCDC22O60826 627 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 GCM2O75603 506 aaPredicted RBP12.53□□□□□ -0.4
LIG1-218ENST00000599322 IFNA14P01570 189 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 IMPDH2P12268 514 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 GGT1P19440 569 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 HOXC12P31275 282 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 MTPNP58546 118 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 H3F3AP84243 136 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 SF3A3Q12874 501 aaKnown RBP eCLIP12.53□□□□□ -0.4
LIG1-218ENST00000599322 BNIP2Q12982 314 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 KLF10Q13118 480 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 MFSD13AQ14CX5 517 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 ALG10BQ5I7T1 473 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 FAM91A1Q658Y4 838 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 C20orf204Q6ZNR8 217 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 NET1Q7Z628 596 aaPredicted RBP12.53□□□□□ -0.4
LIG1-218ENST00000599322 CCDC103Q8IW40 242 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 SLC38A4Q969I6 547 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 C3orf49Q96BT1 292 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 SLC25A36Q96CQ1 311 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 MBD6Q96DN6 1003 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 PLPPR2Q96GM1 343 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 ALPK1Q96QP1 1244 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 LIME1Q9H400 295 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 BEX4Q9NWD9 120 aaPredicted RBP12.53□□□□□ -0.4
LIG1-218ENST00000599322 PRSS50Q9UI38 385 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 RASD1Q9Y272 281 aa12.53□□□□□ -0.4
LIG1-218ENST00000599322 AP3M1Q9Y2T2 418 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms