RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TAAR8Q969N4 342 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 DDIT4LQ96D03 193 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 GMPPAQ96IJ6 420 aaPredicted RBP12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 TPD52L3Q96J77 140 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 ZNF300Q96RE9 604 aaPredicted RBP12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 PSD2Q9BQI7 771 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 PRSS27Q9BQR3 290 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 PCDHAC1Q9H158 963 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 OPN3Q9H1Y3 402 aaPredicted RBP12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 C12orf10Q9HB07 376 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 TMEM27Q9HBJ8 222 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 TIGARQ9NQ88 270 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 KLHL13Q9P2N7 655 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 RPS6KB2Q9UBS0 482 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 BAG5Q9UL15 447 aa12.66□□□□□ -0.38
SHKBP1-217ENST00000598558 SPTAN1Q13813 2472 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 ELOA3DA6NLF2 546 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 ZNF716A6NP11 495 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 EEF1E1-BLOC1S5C9J1V9 151 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 FTCDNL1E5RQL4 147 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 EEF1E1O43324 174 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 PRKD3O94806 890 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 CALB2P22676 271 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 AGTR1P30556 359 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 MAP2K6P52564 334 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 MXRA7P84157 204 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 PIN1Q13526 163 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 OR7A5Q15622 319 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 ELOA3BQ3SY89 546 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 FBXL19-AS1Q494R0 122 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 C16orf89Q6UX73 402 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 RANBP3LQ86VV4 465 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 TMEM99Q8N816 258 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 ELOA3Q8NG57 546 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 STK35Q8TDR2 534 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 ADAMTS16Q8TE57 1224 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 DNAJA4Q8WW22 397 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 RASSF5Q8WWW0 418 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 PROX1Q92786 737 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 SLC47A1Q96FL8 570 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 AMBRA1Q9C0C7 1298 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 ENKD1Q9H0I2 346 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 EVA1AQ9H8M9 152 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 SEC14L4Q9UDX3 406 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 ASH1LQ9NR48 2969 aaKnown RBP12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 PTPN13Q12923 2485 aa12.65□□□□□ -0.38
SHKBP1-217ENST00000598558 LRRN3E7EW58 273 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 J3KTA2 159 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 FFAR1O14842 300 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 SMNDC1O75940 238 aaKnown RBP eCLIP12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 AKR7A3O95154 331 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 ZNF682O95780 498 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 IFNA14P01570 189 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 FCGR2AP12318 317 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 IDUAP35475 653 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 RPS5P46782 204 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 YAP1P46937 504 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 ASCL1P50553 236 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 CSNK2A1P68400 391 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 LSM11P83369 360 aaKnown RBP eCLIP12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 RASGEF1BQ0VAM2 473 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 SAMD4BQ5PRF9 694 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 ABLIM2Q6H8Q1 611 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 ZNF613Q6PF04 617 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 DEF8Q6ZN54 512 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 GDF7Q7Z4P5 450 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 NKAIN4Q8IVV8 208 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 RNF217Q8TC41 542 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 FAM162AQ96A26 154 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC7A6OSQ96CW6 309 aaPredicted RBP12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 HSH2DQ96JZ2 352 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 CLPTM1LQ96KA5 538 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 BCO1Q9HAY6 547 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 PLSCR4Q9NRQ2 329 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 DCAF13Q9NV06 445 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC7A7Q9UM01 511 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 A4GNTQ9UNA3 340 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC9A8Q9Y2E8 581 aa12.64□□□□□ -0.39
SHKBP1-217ENST00000598558 ARHGAP21Q5T5U3 1957 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 TRAPPC13A5PLN9 417 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 MSTNO14793 375 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 FZD7O75084 574 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 PDE5AO76074 875 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 YES1P07947 543 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 PNMTP11086 282 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 CBLP22681 906 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 MNAT1P51948 309 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 NCALDP61601 193 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC35A1P78382 337 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 MS4A2Q01362 244 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 FAM27E3Q08E93 113 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 FOXD4Q12950 439 aaPredicted RBP12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 IQCCQ4KMZ1 466 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC43A2Q8N370 569 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 KDM8Q8N371 416 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 ZIC4Q8N9L1 334 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 RNASE6Q93091 150 aaKnown RBP12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC25A36Q96CQ1 311 aa12.63□□□□□ -0.39
SHKBP1-217ENST00000598558 SLC41A3Q96GZ6 507 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms