RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 LINC00471Q8N535 108 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 ZFP62Q8NB50 900 aaPredicted RBP10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 ACOT11Q8WXI4 607 aaPredicted RBP10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 EME1Q96AY2 570 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 HS6ST2Q96MM7 605 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 KLHDC3Q9BQ90 382 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 PIGQQ9BRB3 760 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 C9orf16Q9BUW7 83 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 RASSF4Q9H2L5 321 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 VCXQ9H320 206 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 VCX3BQ9H321 246 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 SERINC1Q9NRX5 453 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 VNN3Q9NY84 501 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 KIF17Q9P2E2 1029 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 NKX1-2Q9UD57 310 aaPredicted RBP10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 OAZ3Q9UMX2 235 aa10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 SPIN1Q9Y657 262 aaPredicted RBP10.88□□□□□ -0.67
SHKBP1-213ENST00000597325 TMED7-TICAM2A0A0A6YYA0 188 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 TRBV4-1A0A0J9YWV2 114 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 C7orf72A4D263 438 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 B4DXG7 233 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 G3V2T6 193 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 CCL21O00585 134 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 TFECO14948 347 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 SUSD5O60279 629 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 GLSO94925 669 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 RASAL1O95294 804 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 ZNF24P17028 368 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 CCNA2P20248 432 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 MST1P26927 711 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 ELK4P28324 431 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 ADH6P28332 368 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 PPP1R8Q12972 351 aaKnown RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 SELENBP1Q13228 472 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 GLYR1Q49A26 553 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 MTFR2Q6P444 385 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 PODNL1Q6PEZ8 512 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 Q71RC1 249 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 ATG4DQ86TL0 474 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 BIVMQ86UB2 503 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 GTPBP8Q8N3Z3 284 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 FAM109AQ8N4B1 249 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 FAM83FQ8NEG4 500 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 OR10G2Q8NGC3 310 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 OR4C15Q8NGM1 316 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 PIGXQ8TBF5 258 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 SLC7A13Q8TCU3 470 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 GIPC3Q8TF64 312 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 TMEM255BQ8WV15 326 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 TMEM239Q8WW34 195 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 NRBF2Q96F24 287 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 CIB1Q99828 191 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 SMR3AQ99954 134 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 OR2B2Q9GZK3 357 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 ADAM19Q9H013 955 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 NTN4Q9HB63 628 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 MAN2C1Q9NTJ4 1040 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 QPCTLQ9NXS2 382 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 PDP1Q9P0J1 537 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 TNFRSF10DQ9UBN6 386 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 CHRNA9Q9UGM1 479 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 OSGIN1Q9UJX0 560 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 TMED7Q9Y3B3 224 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 MED31Q9Y3C7 131 aa10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 MRPS18CQ9Y3D5 142 aaKnown RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 HRNRQ86YZ3 2850 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-213ENST00000597325 ZANQ9Y493 2812 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 A0A087WUJ7 227 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 SH3PXD2BA1X283 911 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 ARRDC5A6NEK1 342 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 ETV2O00321 342 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 KPNA4O00629 521 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 OR10H3O60404 316 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 LYPD3O95274 346 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 NTN1O95631 604 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 THY1P04216 161 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 RFPL3SP0C7P2 107 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 PTNP21246 168 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 PEX2P28328 305 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 CA7P43166 264 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 MAGEA5P43359 124 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 MAP2K6P52564 334 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 HMGA2P52926 109 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 DLX5P56178 289 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 PMP22Q01453 160 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 MICAQ29983 383 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 HYAL4Q2M3T9 481 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 SLC25A53Q5H9E4 307 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 OTUD3Q5T2D3 398 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 C3orf33Q6P1S2 294 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 MBOAT2Q6ZWT7 520 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 STK32CQ86UX6 486 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 NKAIN4Q8IVV8 208 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 CDK20Q8IZL9 346 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 TMEM251Q8N6I4 163 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 ATG16L2Q8NAA4 619 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 OR4K5Q8NGD3 323 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 SLC25A43Q8WUT9 341 aaPredicted RBP10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 DDIT4LQ96D03 193 aa10.86□□□□□ -0.67
SHKBP1-213ENST00000597325 SFXN2Q96NB2 322 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms