RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 LIPT2A6NK58 231 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 OR5H1A6NKK0 313 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 HMGB1P1B2RPK0 211 aaPredicted RBP11.5□□□□□ -0.57
LIG1-212ENST00000596549 PDLIM1O00151 329 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 GPR171O14626 319 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 CLOCKO15516 846 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 ITGA5P08648 1049 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 ARAFP10398 606 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 HOXB4P17483 251 aaPredicted RBP11.5□□□□□ -0.57
LIG1-212ENST00000596549 ATP4BP51164 291 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 P2RY4P51582 365 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 SLC35A1P78382 337 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 HOXC5Q00444 222 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 CEACAM7Q14002 265 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 CAPRIN1Q14444 709 aaKnown RBP11.5□□□□□ -0.57
LIG1-212ENST00000596549 SQLEQ14534 574 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 LARS2Q15031 903 aaKnown RBP11.5□□□□□ -0.57
LIG1-212ENST00000596549 PPA1Q15181 289 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 ZNF311Q5JNZ3 666 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 TIMM23BQ5SRD1 257 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 OTUD3Q5T2D3 398 aaPredicted RBP11.5□□□□□ -0.57
LIG1-212ENST00000596549 PRAMEF8Q5VWM4 474 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 PRAMEF7Q5VXH5 474 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 WBP2NLQ6ICG8 309 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 CASP12Q6UXS9 341 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 YTHDF3Q7Z739 585 aaKnown RBP11.5□□□□□ -0.57
LIG1-212ENST00000596549 TMEM99Q8N816 258 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 NFKBIDQ8NI38 313 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 DYDC1Q8WWB3 177 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 CKAP2Q8WWK9 683 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 HSD17B8Q92506 261 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 THOC1Q96FV9 657 aaKnown RBP11.5□□□□□ -0.57
LIG1-212ENST00000596549 POM121Q96HA1 1249 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 COX4I2Q96KJ9 171 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 ESRP2Q9H6T0 727 aaKnown RBP11.5□□□□□ -0.57
LIG1-212ENST00000596549 GMEB1Q9Y692 573 aa11.5□□□□□ -0.57
LIG1-212ENST00000596549 ZFHX3Q15911 3703 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 TRIM64A6NGJ6 449 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 TRIM64BA6NI03 449 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 EIF1BO60739 113 aaKnown RBP11.49□□□□□ -0.57
LIG1-212ENST00000596549 NPIPB7O75200 414 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 MRPL33O75394 65 aaKnown RBP11.49□□□□□ -0.57
LIG1-212ENST00000596549 AKR7A3O95154 331 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 CD3EP07766 207 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 SOD3P08294 240 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 INHBBP09529 407 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 DANCRP0C864 163 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 PAX1P15863 534 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 GGT1P19440 569 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 MAP2K6P52564 334 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 SLC25A3Q00325 362 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 EGR4Q05215 589 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 SPOCK1Q08629 439 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 FAPQ12884 760 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 OR7A5Q15622 319 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 ZNF672Q499Z4 452 aaPredicted RBP11.49□□□□□ -0.57
LIG1-212ENST00000596549 GLIPR1L2Q4G1C9 344 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 GCNT6Q5T4J0 391 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 TSPO2Q5TGU0 170 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 PRSS57Q6UWY2 283 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 UBE2J2Q8N2K1 259 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 TMEM171Q8WVE6 324 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 STON2Q8WXE9 905 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 FBXW5Q969U6 566 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 TMEM45BQ96B21 275 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 MAGEB18Q96M61 343 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 ZNF385AQ96PM9 386 aaKnown RBP11.49□□□□□ -0.57
LIG1-212ENST00000596549 USB1Q9BQ65 265 aaKnown RBP11.49□□□□□ -0.57
LIG1-212ENST00000596549 CPPED1Q9BRF8 314 aaPredicted RBP11.49□□□□□ -0.57
LIG1-212ENST00000596549 PTDSS2Q9BVG9 487 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 TRIM2Q9C040 744 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 AMBRA1Q9C0C7 1298 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 RAD21L1Q9H4I0 556 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 VIPAS39Q9H9C1 493 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 SLC7A10Q9NS82 523 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 ZNF701Q9NV72 531 aaPredicted RBP11.49□□□□□ -0.57
LIG1-212ENST00000596549 TAS2R16Q9NYV7 291 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 SLC9A8Q9Y2E8 581 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 IFT52Q9Y366 437 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 MTORP42345 2549 aa11.49□□□□□ -0.57
LIG1-212ENST00000596549 ARID1AO14497 2285 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 ROS1P08922 2347 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 A0A1W2PR80 420 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 TMEM247A6NEH6 219 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 AQP7P3A6NL99 342 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 SHISA9B4DS77 424 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 FTCDNL1E5RQL4 147 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 ARHGEF9O43307 516 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 EDF1O60869 148 aaKnown RBP11.48□□□□□ -0.57
LIG1-212ENST00000596549 FZD7O75084 574 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 GPIP06744 558 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 ETS2P15036 469 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 NCF2P19878 526 aaPredicted RBP11.48□□□□□ -0.57
LIG1-212ENST00000596549 CXCR1P25024 350 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 HTR2AP28223 471 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 GABRA6Q16445 453 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 ZSWIM7Q19AV6 140 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 PGGHGQ32M88 737 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 AGKQ53H12 422 aa11.48□□□□□ -0.57
LIG1-212ENST00000596549 C9orf135Q5VTT2 229 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms