RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 LEF1Q9UJU2 399 aaPredicted RBP13.51□□□□□ -0.25
TRIM28-203ENST00000593582 NDUFAF1Q9Y375 327 aa13.51□□□□□ -0.25
TRIM28-203ENST00000593582 LIPT2A6NK58 231 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 RAMP1O60894 148 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 SMPD2O60906 423 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 IGHV3-9P01782 118 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 GPX2P18283 190 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 GGT1P19440 569 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 COX5AP20674 150 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 ADSLP30566 484 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-203ENST00000593582 BNIP2Q12982 314 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 CEACAM7Q14002 265 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 OR7A5Q15622 319 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 STK11Q15831 433 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 METTL21CQ5VZV1 264 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 DLEU7Q6UYE1 221 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 SSX8Q7RTT4 187 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 C10orf111Q8N326 155 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 MUCL1Q96DR8 90 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 TAPBPLQ9BX59 468 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 IKZF5Q9H5V7 419 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 ASB6Q9NWX5 421 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 SLC9A8Q9Y2E8 581 aa13.5□□□□□ -0.25
TRIM28-203ENST00000593582 ARHGEF9O43307 516 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 FRS3O43559 492 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 IGHV1-2P23083 117 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 HOXC12P31275 282 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 NKX6-1P78426 367 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-203ENST00000593582 HOXC5Q00444 222 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 FOXD4Q12950 439 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-203ENST00000593582 SCARB2Q14108 478 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 SLC17A1Q14916 467 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 TIMM23BQ5SRD1 257 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 OTUD3Q5T2D3 398 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-203ENST00000593582 CASP12Q6UXS9 341 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 DHDDSQ86SQ9 333 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 P2RY8Q86VZ1 359 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 P3H2Q8IVL5 708 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 DPP10Q8N608 796 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 TSPEARQ8WU66 669 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 C3orf49Q96BT1 292 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 ZNF607Q96SK3 696 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 CPPED1Q9BRF8 314 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-203ENST00000593582 TMEM204Q9BSN7 226 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 ZNF385DQ9H6B1 395 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 RPS6KB2Q9UBS0 482 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 RNF115Q9Y4L5 304 aa13.49□□□□□ -0.25
TRIM28-203ENST00000593582 MED13LQ71F56 2210 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 CIB4A0PJX0 185 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 PRORSD1PA6NEY8 169 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 AQP7P3A6NL99 342 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 CCT8L1PA6NM43 557 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 HS3ST1O14792 307 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 CLOCKO15516 846 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 SERPINB7O75635 380 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 AKR7A3O95154 331 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 PLAUP00749 431 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 CD3EP07766 207 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 TROVE2P10155 538 aaKnown RBP eCLIP13.48□□□□□ -0.258e-18■□□□□ 9.2
TRIM28-203ENST00000593582 NTF4P34130 210 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 FAPQ12884 760 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 PPA1Q15181 289 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 ADRM1Q16186 407 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 CYP51A1Q16850 503 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 RUNDC3AQ59EK9 446 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 NCMAPQ5T1S8 102 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 C1orf140Q5VVS0 124 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 SHEQ5VZ18 495 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 DHRS4L2Q6PKH6 230 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 ATG4DQ86TL0 474 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-203ENST00000593582 GPAT4Q86UL3 456 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 LSRQ86X29 649 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-203ENST00000593582 LRRC75A-AS1Q8N1F1 130 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 ZNF433Q8N7K0 673 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-203ENST00000593582 TMEM99Q8N816 258 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 HIPK4Q8NE63 616 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 WFDC11Q8NEX6 87 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 BHLHE22Q8NFJ8 381 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-203ENST00000593582 STK35Q8TDR2 534 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 CGREF1Q99674 301 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 SF3B5Q9BWJ5 86 aaKnown RBP13.48□□□□□ -0.25
TRIM28-203ENST00000593582 ADPRHL2Q9NX46 363 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 TAS2R16Q9NYV7 291 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 UPB1Q9UBR1 384 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 MALT1Q9UDY8 824 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 SLC13A4Q9UKG4 626 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 ANGPT4Q9Y264 503 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 FLVCR1Q9Y5Y0 555 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 ZFHX3Q15911 3703 aa13.48□□□□□ -0.25
TRIM28-203ENST00000593582 FREM1Q5H8C1 2179 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 OR5H1A6NKK0 313 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 ELOA3DA6NLF2 546 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-203ENST00000593582 TMEM229AB2RXF0 380 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 NPIPB7O75200 414 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 VAMP5O95183 116 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 AHSA1O95433 338 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 AQP1P29972 269 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 NCALDP61601 193 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 BSPH1Q075Z2 132 aa13.47□□□□□ -0.25
TRIM28-203ENST00000593582 ELOA3BQ3SY89 546 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms