RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NOSIPQ9Y314 301 aaKnown RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 IQCMA0A1B0GVH7 501 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 SERTM1A2A2V5 107 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 FIGNL2A6NMB9 653 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 SGCEO43556 437 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 DNAJB5O75953 348 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 MBP02144 154 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 DRD5P21918 477 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 DCKP27707 260 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 ARRB2P32121 409 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 EVI2BP34910 448 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 OR1C1Q15619 314 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 FIP1L1Q6UN15 594 aaKnown RBP9.05□□□□□ -0.96
LIG3-216ENST00000593099 DLEU7Q6UYE1 221 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 ZNF836Q6ZNA1 936 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 TBC1D15Q8TC07 691 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 TTTY10Q9BZA0 68 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 DPPA5A6NC42 116 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 OR7A10O76100 309 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 FCGR2AP12318 317 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 COL19A1Q14993 1142 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 C3orf33Q6P1S2 294 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 CYB561A3Q8NBI2 242 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 MUS81Q96NY9 551 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 LAT2Q9GZY6 243 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 APC2O95996 2303 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 EEF1E1-BLOC1S5C9J1V9 151 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 PLOD2O00469 737 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 EEF1E1O43324 174 aaKnown RBP9.05□□□□□ -0.96
LIG3-216ENST00000593099 ICOSLGO75144 302 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 CHRM4P08173 479 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 NAGAP17050 411 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 MAPK3P27361 379 aaPredicted RBP9.05□□□□□ -0.96
LIG3-216ENST00000593099 S100GP29377 79 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 APLNRP35414 380 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 RIN1Q13671 783 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 RNF151Q2KHN1 245 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 ODF4Q2M2E3 257 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 MZT2BQ6NZ67 158 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 DHRS4L2Q6PKH6 230 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 ANKRD13BQ86YJ7 626 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 SLC15A4Q8N697 577 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 IQCF1Q8N6M8 205 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 AMER3Q8N944 861 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 PLPP5Q8NEB5 264 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 ZNF775Q96BV0 537 aaPredicted RBP9.05□□□□□ -0.96
LIG3-216ENST00000593099 WDR12Q9GZL7 423 aaKnown RBP9.05□□□□□ -0.96
LIG3-216ENST00000593099 TCRBV3S1A0A5B6 114 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 TRABD2BA6NFA1 517 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 KDM4BO94953 1096 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 CSTBP04080 98 aaKnown RBP9.05□□□□□ -0.96
LIG3-216ENST00000593099 HLA-DPB1P04440 258 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 ACP2P11117 423 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 GM2AP17900 193 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 CEBPGP53567 150 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 APOFQ13790 326 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 MLC1Q15049 377 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 SSX6Q7RTT6 188 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 IGFN1Q86VF2 1251 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 OR8H3Q8N146 312 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 OR6T1Q8NGN1 323 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 PSMA8Q8TAA3 256 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 FNDC8Q8TC99 324 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 PHF12Q96QT6 1004 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 HDHD5Q9BXW7 423 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 PCDHB16Q9NRJ7 776 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 TBCCD1Q9NVR7 557 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 PLA2G3Q9NZ20 509 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 USP22Q9UPT9 525 aa9.05□□□□□ -0.96
LIG3-216ENST00000593099 CBY3A6NI87 242 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 PSMD9O00233 223 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ZNF195O14628 629 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 HMGB3O15347 200 aaKnown RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 PRKNO60260 465 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 HPP00738 406 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ERCC1P07992 297 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 HCKP08631 526 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 RAB2AP61019 212 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ADAM8P78325 824 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ETFRF1Q6IPR1 90 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ZSCAN4Q8NAM6 433 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 TRUB1Q8WWH5 349 aaKnown RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 ST8SIA1Q92185 356 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 SPTSSAQ969W0 71 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 FRMD6Q96NE9 622 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 CALHM2Q9HA72 323 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 TRAV27A0A087WT01 109 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 CBR3O75828 277 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 SORBS2O94875 1100 aaKnown RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 CLIC3O95833 236 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ITGA5P08648 1049 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 CEACAM1P13688 526 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 SLC1A3P43003 542 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 PRKXP51817 358 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 CLDN17P56750 224 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ST3GAL4Q11206 333 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 DUSP8Q13202 625 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 FAM189A2Q15884 450 aa9.04□□□□□ -0.96
LIG3-216ENST00000593099 ZNF829Q3KNS6 432 aaPredicted RBP9.04□□□□□ -0.96
LIG3-216ENST00000593099 FAM69AQ5T7M9 428 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms