RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CADM2Q8N3J6 435 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 OR52N5Q8NH56 324 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 GTF2H4Q92759 462 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 RADILQ96JH8 1075 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 ZNF443Q9Y2A4 671 aaPredicted RBP18.03■□□□□ 0.48
SHMT1-209ENST00000582653 CHST2Q9Y4C5 530 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 PCDHB14Q9Y5E9 798 aa18.03■□□□□ 0.48
SHMT1-209ENST00000582653 A0A1W2PR80 420 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 CIB4A0PJX0 185 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 FAM234BA2RU67 622 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 CCT8L1PA6NM43 557 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 SHISA9B4DS77 424 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 CD8AP01732 235 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 UQCRBP14927 111 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 CXCR1P25024 350 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 CDKN1AP38936 164 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 CRISP3P54108 245 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 BNIP2Q12982 314 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 LIN52Q52LA3 116 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 AGBL2Q5U5Z8 902 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 MSANTD1Q6ZTZ1 278 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 ZNF440Q8IYI8 595 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 OR52E4Q8NGH9 312 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 TMEM19Q96HH6 336 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 NAA11Q9BSU3 229 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-209ENST00000582653 TRAF4Q9BUZ4 470 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-209ENST00000582653 REG4Q9BYZ8 158 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 PAIP1Q9H074 479 aaKnown RBP18.02■□□□□ 0.48
SHMT1-209ENST00000582653 SLCO1B3Q9NPD5 702 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 FAIMQ9NVQ4 179 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 ASB6Q9NWX5 421 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 CALML5Q9NZT1 146 aa18.02■□□□□ 0.48
SHMT1-209ENST00000582653 RNF223E7ERA6 249 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 EIF1BO60739 113 aaKnown RBP18.01■□□□□ 0.47
SHMT1-209ENST00000582653 MAP2K6P52564 334 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 CEACAM7Q14002 265 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 VEZF1Q14119 521 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 RGNQ15493 299 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 C9orf135Q5VTT2 229 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 CASP12Q6UXS9 341 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 MAL2Q969L2 176 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 MUS81Q96NY9 551 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 EBF4Q9BQW3 602 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 SLCO5A1Q9H2Y9 848 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 FLVCR1Q9Y5Y0 555 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 HIVEP2P31629 2446 aa18.01■□□□□ 0.47
SHMT1-209ENST00000582653 CSPG4Q6UVK1 2322 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 A0A0G2JPF8 293 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 KIAA1324LA8MWY0 1029 aaPredicted RBP18■□□□□ 0.47
SHMT1-209ENST00000582653 HNRNPCL2B2RXH8 293 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 HNRNPCL3B7ZW38 293 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 CLIC1O00299 241 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 ABCD4O14678 606 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 HNRNPCL1O60812 293 aaKnown RBP18■□□□□ 0.47
SHMT1-209ENST00000582653 AKR7A3O95154 331 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 HNRNPCL4P0DMR1 293 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 PTNP21246 168 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 IDH3AP50213 366 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 KRTAP1-1Q07627 177 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 SLC17A1Q14916 467 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 OR7A5Q15622 319 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 OTUD3Q5T2D3 398 aaPredicted RBP18■□□□□ 0.47
SHMT1-209ENST00000582653 DNM1P46Q6ZS02 220 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 DTX2Q86UW9 622 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 TMEM99Q8N816 258 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 C7orf26Q96N11 449 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 ALG2Q9H553 416 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 TCF7L2Q9NQB0 619 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 SLC7A10Q9NS82 523 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 TAS2R16Q9NYV7 291 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 PRDM4Q9UKN5 801 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 ZNF232Q9UNY5 417 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 MGAT4BQ9UQ53 548 aa18■□□□□ 0.47
SHMT1-209ENST00000582653 LIPT2A6NK58 231 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 ITGA5P08648 1049 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 HOXB9P17482 250 aaPredicted RBP17.99■□□□□ 0.47
SHMT1-209ENST00000582653 PTAFRP25105 342 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 ACVR1BP36896 505 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 ZNF83P51522 516 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 HOXC5Q00444 222 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 LARS2Q15031 903 aaKnown RBP17.99■□□□□ 0.47
SHMT1-209ENST00000582653 GABRA6Q16445 453 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 TSPO2Q5TGU0 170 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 RNF220Q5VTB9 566 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 WBP2NLQ6ICG8 309 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 OR7E24Q6IFN5 339 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 PAQR6Q6TCH4 344 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 TMEM108Q6UXF1 575 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 SERPINA11Q86U17 422 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 FUNDC1Q8IVP5 155 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 LRRC8CQ8TDW0 803 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 SPATA9Q9BWV2 254 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 C1QTNF6Q9BXI9 259 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 PARPBPQ9NWS1 579 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 SLC25A37Q9NYZ2 338 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 SLAMF8Q9P0V8 285 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 MALT1Q9UDY8 824 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 SLC9A8Q9Y2E8 581 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 SLC25A15Q9Y619 301 aa17.99■□□□□ 0.47
SHMT1-209ENST00000582653 TMEM247A6NEH6 219 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms