RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 INPP5JQ15735 1006 aaPredicted RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 SLC35F1Q5T1Q4 408 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ZNF468Q5VIY5 522 aaPredicted RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 B3GNTL1Q67FW5 361 aaPredicted RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 H3F3CQ6NXT2 135 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 BORAQ6PGQ7 559 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ARSKQ6UWY0 536 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 RTL4Q6ZR62 310 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 IGFN1Q86VF2 1251 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ADGRG3Q86Y34 549 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 CLVS1Q8IUQ0 354 aaPredicted RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 DND1Q8IYX4 353 aaKnown RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 ARMC10Q8N2F6 343 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 SLC43A2Q8N370 569 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 MOSPD2Q8NHP6 518 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ADAMTS17Q8TE56 1095 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ADAMTS14Q8WXS8 1223 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 TAAR8Q969N4 342 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 NACC2Q96BF6 587 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 DNAJA3Q96EY1 480 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 THOC3Q96J01 351 aaKnown RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 NPAS1Q99742 590 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 TUBA1CQ9BQE3 449 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 FAM117AQ9C073 453 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 LHPPQ9H008 270 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 SH2D2AQ9NP31 389 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 HINT3Q9NQE9 182 aaKnown RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 HPF1Q9NWY4 346 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 BAIAP2Q9UQB8 552 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 VDAC3Q9Y277 283 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 RPL36Q9Y3U8 105 aaKnown RBP9.54□□□□□ -0.88
SS18-217ENST00000580958 PCDHGB6Q9Y5F9 930 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 PCDHGB1Q9Y5G3 927 aa9.54□□□□□ -0.88
SS18-217ENST00000580958 ZNF99A8MXY4 864 aaPredicted RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 SHISA8B8ZZ34 492 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 MCIDASD6RGH6 385 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 PRODHO43272 600 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 SEC14L2O76054 403 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 HK1P19367 917 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 RPL4P36578 427 aaKnown RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 AQP2P41181 271 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 RPS5P46782 204 aaKnown RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 GP2P55259 537 aaKnown RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 DLX5P56178 289 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 RPS4XP62701 263 aaKnown RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 FOXK2Q01167 660 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 FOXF1Q12946 379 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 IRF3Q14653 427 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 TGIF1Q15583 401 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 CNPY1Q3B7I2 92 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 AADACL4Q5VUY2 407 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 C1QL3Q5VWW1 255 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 GTF2IRD2BQ6EKJ0 949 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 TMEM81Q6P7N7 255 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 CXXC5Q7LFL8 322 aaKnown RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 GTF2IRD2Q86UP8 949 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 CPOQ8IVL8 374 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 GALNT15Q8N3T1 639 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 FADS6Q8N9I5 356 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 BBS1Q8NFJ9 593 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 OR4K17Q8NGC6 315 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 OR13F1Q8NGS4 319 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 POC1BQ8TC44 478 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 STK35Q8TDR2 534 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 LIPHQ8WWY8 451 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 RORBQ92753 470 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 OTULINQ96BN8 352 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 ERMAPQ96PL5 475 aaPredicted RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 SECISBP2Q96T21 854 aaKnown RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 TAPBPLQ9BX59 468 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 ANGPTL4Q9BY76 406 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 MED20Q9H944 212 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 GPN2Q9H9Y4 310 aaPredicted RBP9.53□□□□□ -0.88
SS18-217ENST00000580958 CPNE5Q9HCH3 593 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 ACOT13Q9NPJ3 140 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 ASCL3Q9NQ33 180 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 NANSQ9NR45 359 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 DLL3Q9NYJ7 618 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 TAS2R16Q9NYV7 291 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 FBXL2Q9UKC9 423 aa9.53□□□□□ -0.88
SS18-217ENST00000580958 FAM183AA6NL82 134 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 SNTNA6NMZ2 147 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 RIIAD1A6NNX1 92 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 A8MVM7 634 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 FAM47E-STBD1D6RA91 191 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 G3V3Y1 287 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 BLOC1S5-TXNDC5H3BN57 136 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 NPIPB7O75200 414 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 IFNGP01579 166 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 LCKP06239 509 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 ASAH2BP0C7U1 165 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 LIFP15018 202 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 TCEA1P23193 301 aaKnown RBP9.52□□□□□ -0.89
SS18-217ENST00000580958 PSMB9P28065 219 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 TTKP33981 857 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 ZNF41P51814 821 aaPredicted RBP9.52□□□□□ -0.89
SS18-217ENST00000580958 CDH11P55287 796 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 ERVK-25P63136 954 aa9.52□□□□□ -0.89
SS18-217ENST00000580958 SNTA1Q13424 505 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms