RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 RPS6KB2Q9UBS0 482 aa21.17■□□□□ 0.98
SHMT1-206ENST00000579558 PRORSD1PA6NEY8 169 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 LIPT2A6NK58 231 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 TPST1O60507 370 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 SERPINB7O75635 380 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 ATE1O95260 518 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 RBBP4Q09028 425 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 ITGADQ13349 1161 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 CAPRIN1Q14444 709 aaKnown RBP21.16■□□□□ 0.98
SHMT1-206ENST00000579558 BEX5Q5H9J7 111 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 PAQR6Q6TCH4 344 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 ATG4DQ86TL0 474 aaPredicted RBP21.16■□□□□ 0.98
SHMT1-206ENST00000579558 COMTD1Q86VU5 262 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 PTOV1Q86YD1 416 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 HS3ST6Q96QI5 342 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 FOXC2Q99958 501 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 TAPBPLQ9BX59 468 aa21.16■□□□□ 0.98
SHMT1-206ENST00000579558 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-206ENST00000579558 TMEM229AB2RXF0 380 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 FBP2O00757 339 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 KLF4O43474 513 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 LOXP28300 417 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-206ENST00000579558 KLF10Q13118 480 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 GLIPR1L2Q4G1C9 344 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 OTUD3Q5T2D3 398 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-206ENST00000579558 C1orf140Q5VVS0 124 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 ALKBH2Q6NS38 261 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 BHLHA15Q7RTS1 189 aaPredicted RBP21.15■□□□□ 0.98
SHMT1-206ENST00000579558 ARMC8Q8IUR7 673 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 APH1AQ96BI3 265 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 SAR1AQ9NR31 198 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 SLC13A4Q9UKG4 626 aa21.15■□□□□ 0.98
SHMT1-206ENST00000579558 MRPL33O75394 65 aaKnown RBP21.14■□□□□ 0.97
SHMT1-206ENST00000579558 LYZL6O75951 148 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 AKR7A3O95154 331 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 CNOT4O95628 575 aaKnown RBP21.14■□□□□ 0.97
SHMT1-206ENST00000579558 ADSLP30566 484 aaPredicted RBP21.14■□□□□ 0.97
SHMT1-206ENST00000579558 MDH1P40925 334 aaKnown RBP21.14■□□□□ 0.97
SHMT1-206ENST00000579558 NCALDP61601 193 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 TRMT5Q32P41 509 aaKnown RBP21.14■□□□□ 0.97
SHMT1-206ENST00000579558 UBE2J2Q8N2K1 259 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 TMEM99Q8N816 258 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 BHLHE22Q8NFJ8 381 aaPredicted RBP21.14■□□□□ 0.97
SHMT1-206ENST00000579558 STK35Q8TDR2 534 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 MBD6Q96DN6 1003 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 KAT8Q9H7Z6 458 aaKnown RBP21.14■□□□□ 0.97
SHMT1-206ENST00000579558 ADPRHL2Q9NX46 363 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 KLHL14Q9P2G3 628 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 CELSR1Q9NYQ6 3014 aa21.14■□□□□ 0.97
SHMT1-206ENST00000579558 ELOA3DA6NLF2 546 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-206ENST00000579558 MFN2O95140 757 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 AHSA1O95433 338 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 IGHV3-9P01782 118 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 HTR2AP28223 471 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 NR1H2P55055 460 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 PCBP3P57721 371 aaKnown RBP21.13■□□□□ 0.97
SHMT1-206ENST00000579558 RGS8P57771 180 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-206ENST00000579558 CYLC2Q14093 348 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-206ENST00000579558 SLC17A1Q14916 467 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 MAPRE2Q15555 327 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 ELOA3BQ3SY89 546 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 MMEL1Q495T6 779 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 FBXW9Q5XUX1 488 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 CASP12Q6UXS9 341 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 NET1Q7Z628 596 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-206ENST00000579558 LSMEM1Q8N8F7 131 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 ELOA3Q8NG57 546 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 OR52E4Q8NGH9 312 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 OR10A6Q8NH74 314 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 USB1Q9BQ65 265 aaKnown RBP21.13■□□□□ 0.97
SHMT1-206ENST00000579558 TRIM2Q9C040 744 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 CXXC4Q9H2H0 198 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 UBTD1Q9HAC8 227 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 TESQ9UGI8 421 aaKnown RBP21.13■□□□□ 0.97
SHMT1-206ENST00000579558 SLC9A8Q9Y2E8 581 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 FLVCR1Q9Y5Y0 555 aa21.13■□□□□ 0.97
SHMT1-206ENST00000579558 A0A1B0GWA3 101 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 AQP7P3A6NL99 342 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 ATP8B1O43520 1251 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 NPIPB7O75200 414 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 COX5AP20674 150 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 IGHV1-2P23083 117 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 NTF4P34130 210 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 DMTNQ08495 405 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 TAB1Q15750 504 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 DEFB113Q30KQ7 82 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 REP15Q6BDI9 236 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 C6orf89Q6UWU4 347 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 SLC30A8Q8IWU4 369 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 SMYD1Q8NB12 490 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 HSD17B8Q92506 261 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 PLPPR2Q96GM1 343 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 ALPK1Q96QP1 1244 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 PRR14Q9BWN1 585 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 C12orf10Q9HB07 376 aa21.12■□□□□ 0.97
SHMT1-206ENST00000579558 F8P00451 2351 aa21.11■□□□□ 0.97
SHMT1-206ENST00000579558 BBIP1A8MTZ0 92 aa21.11■□□□□ 0.97
SHMT1-206ENST00000579558 MRASO14807 208 aa21.11■□□□□ 0.97
SHMT1-206ENST00000579558 OPN1SWP03999 348 aa21.11■□□□□ 0.97
SHMT1-206ENST00000579558 CD53P19397 219 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms