RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CNTRLQ7Z7A1 2325 aa5.52□□□□□ -1.53
VPS53-212ENST00000572259 COL27A1Q8IZC6 1860 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 MDC1Q14676 2089 aaKnown RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 SPTA1P02549 2419 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 A0A087WUV0 522 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 OR6C65A6NJZ3 312 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 GOLGA8TH3BQL2 631 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 XRCC3O43542 346 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 RNF13O43567 381 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 TLX3O43711 291 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 CBR3O75828 277 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 ZBTB11O95625 1053 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 IGFBP1P08833 259 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 CHRM5P08912 532 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 ZCCHC18P0CG32 403 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 STAG3L2P0CL84 134 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 UMPSP11172 480 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 CCL4P13236 92 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 ITGB6P18564 788 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 NELFEP18615 380 aaKnown RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 POLR2CP19387 275 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 HNF1AP20823 631 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 PTNP21246 168 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 MPZP25189 248 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 UCP1P25874 307 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 PDHA2P29803 388 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 PTGFRP43088 359 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 MAGEA3P43357 314 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 ZNF84P51523 738 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 HMGA2P52926 109 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 COL10A1Q03692 680 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 RASGEF1BQ0VAM2 473 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 ZNF829Q3KNS6 432 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 ESCO2Q56NI9 601 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 PRAMEF17Q5VTA0 474 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 ZNF470Q6ECI4 717 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 SIGIRRQ6IA17 410 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 SIGLEC15Q6ZMC9 328 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 CDHR3Q6ZTQ4 885 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 FAM92BQ6ZTR7 304 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 KCTD8Q6ZWB6 473 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 CENPUQ71F23 418 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 KCNMB4Q86W47 210 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 DCUN1D3Q8IWE4 304 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 FOXRED2Q8IWF2 684 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 SLC22A15Q8IZD6 547 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 LRRC17Q8N6Y2 441 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 TMEM217Q8N7C4 229 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 FAM47BQ8NA70 645 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 OR52N4Q8NGI2 321 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 OR5K2Q8NHB8 316 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 VANGL1Q8TAA9 524 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 FAM81AQ8TBF8 368 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 PNPT1Q8TCS8 783 aaKnown RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 GLYATL2Q8WU03 294 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 HAS2Q92819 552 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 CIDECQ96AQ7 238 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 KIAA1143Q96AT1 154 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 CCNL2Q96S94 520 aaPredicted RBP5.51□□□□□ -1.53
VPS53-212ENST00000572259 CHRDL1Q9BU40 450 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 CALHM2Q9HA72 323 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 OCIAD1Q9NX40 245 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 TMEM9Q9P0T7 183 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 TXNDC16Q9P2K2 825 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 NDRG3Q9UGV2 375 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 FBXO5Q9UKT4 447 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 RARRES3Q9UL19 164 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 CBY1Q9Y3M2 126 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 CELSR3Q9NYQ7 3312 aa5.51□□□□□ -1.53
VPS53-212ENST00000572259 COL6A6A6NMZ7 2263 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 CCDC88CQ9P219 2028 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ZZEF1O43149 2961 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 CACNA1GO43497 2377 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 WDFY3Q8IZQ1 3526 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 A0A096LPK6 155 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ZCWPW2A0A1B0GU75 182 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 A0A1W2PNU3 283 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 EIF4E1BA6NMX2 242 aaKnown RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 IQCF5A8MTL0 148 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 GOLGA8KD6RF30 607 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 PPIAL4DF5H284 164 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 M0QZ24 198 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 EIF3HO15372 352 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS53-212ENST00000572259 PROP1O75360 226 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 BCAS1O75363 584 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 GMNNO75496 209 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 SORBS2O94875 1100 aaKnown RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 CATP04040 527 aaKnown RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 KLK3P07288 261 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 HBQ1P09105 142 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 CBSLP0DN79 551 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ENO3P13929 434 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 POU2F1P14859 743 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 SRMP19623 302 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 IVDP26440 423 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 PRDX3P30048 256 aaKnown RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 CCR7P32248 378 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 CBSP35520 551 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ETV5P41161 510 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 GPR12P47775 334 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms