RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SLCO1C1Q9NYB5 712 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ZMIZ1Q9ULJ6 1067 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 OR6C74A6NCV1 312 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 LILRB3O75022 631 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 FKTNO75072 461 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 KAT7O95251 611 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 NUDT14O95848 222 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 AGR2O95994 175 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ACTC1P68032 377 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ACTA1P68133 377 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 MLC1Q15049 377 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 HEPHL1Q6MZM0 1159 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 FAM198BQ6UWH4 519 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ADAMTSL4Q6UY14 1074 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 LNX2Q8N448 690 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 MKKSQ9NPJ1 570 aaPredicted RBP13.36□□□□□ -0.27
VPS35-210ENST00000568784 SIGLEC7Q9Y286 467 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 LOC105371267A0A1B0GV96 52 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 H0Y8X5 98 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 TYRP1P17643 537 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 POU3F2P20265 443 aaPredicted RBP13.36□□□□□ -0.27
VPS35-210ENST00000568784 ZNF10P21506 573 aaPredicted RBP13.36□□□□□ -0.27
VPS35-210ENST00000568784 NDUFS1P28331 727 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 CCR9P51686 369 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 HTRA3P83110 453 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 CFAP77Q6ZQR2 320 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 JAZF1Q86VZ6 243 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 TSEN15Q8WW01 171 aaKnown RBP13.36□□□□□ -0.27
VPS35-210ENST00000568784 ULBP3Q9BZM4 244 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 CAMK2AQ9UQM7 478 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 A0A1B0GTH9 108 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 BHLHE40O14503 412 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 SIGLEC5O15389 551 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 DOK2O60496 412 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 FGF19O95750 216 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ATP1B1P05026 303 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 THBS2P35442 1172 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 NUDT1P36639 197 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 PTH2RP49190 550 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 AKR1D1P51857 326 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ZNF136P52737 540 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 SIGLEC14Q08ET2 396 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 RUNX2Q13950 521 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 TRAM1Q15629 374 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 PCGF3Q3KNV8 242 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 GPR137Q96N19 417 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 FAM83CQ9BQN1 747 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ACTR6Q9GZN1 396 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 ANKRD19PQ9H560 264 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 FGF22Q9HCT0 170 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 SCML1Q9UN30 329 aa13.36□□□□□ -0.27
VPS35-210ENST00000568784 RTTNQ86VV8 2226 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 TMEM72A0PK05 275 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 URADA6NGE7 173 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 PLPP2O43688 288 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 FGF17O60258 216 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 SRMP19623 302 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 MAP2K6P52564 334 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 ERV3-1Q14264 604 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 ZNF658BQ4V348 819 aaPredicted RBP13.35□□□□□ -0.27
VPS35-210ENST00000568784 LEG1Q6P5S2 330 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 LIX1LQ8IVB5 337 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 OR4N2Q8NGD1 307 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 DVL3Q92997 716 aaPredicted RBP13.35□□□□□ -0.27
VPS35-210ENST00000568784 ABRACLQ9P1F3 81 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 NPFFR2Q9Y5X5 522 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 STON1Q9Y6Q2 735 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 ITGA10O75578 1167 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 NID1P14543 1247 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 FXYD6P3P58550 94 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 TNFRSF17Q02223 184 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 FGL2Q14314 439 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 LINC00303Q3SY05 128 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 FAM78AQ5JUQ0 283 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 ARHGAP11AQ6P4F7 1023 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 OR6N2Q8NGY6 317 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 WDR89Q96FK6 387 aaPredicted RBP13.35□□□□□ -0.27
VPS35-210ENST00000568784 RBM18Q96H35 190 aaKnown RBP13.35□□□□□ -0.27
VPS35-210ENST00000568784 RBP7Q96R05 134 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 PDCD10Q9BUL8 212 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 MEPEQ9NQ76 525 aaPredicted RBP13.35□□□□□ -0.27
VPS35-210ENST00000568784 TMEM74BQ9NUR3 256 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 TBC1D29Q9UFV1 150 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 C7orf66A4D0T2 115 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 GOSR2O14653 212 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 ERVK-21P61565 698 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 GAS6Q14393 721 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 TMEM52BQ4KMG9 183 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 BEX5Q5H9J7 111 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 METTL11BQ5VVY1 283 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 OR51Q1Q8NH59 317 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 BRIX1Q8TDN6 353 aaKnown RBP13.35□□□□□ -0.27
VPS35-210ENST00000568784 PATE1Q8WXA2 126 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 GAL3ST3Q96A11 431 aa13.35□□□□□ -0.27
VPS35-210ENST00000568784 POLMQ9NP87 494 aaPredicted RBP13.35□□□□□ -0.27
VPS35-210ENST00000568784 MRPS2Q9Y399 296 aaKnown RBP13.35□□□□□ -0.27
VPS35-210ENST00000568784 MDC1Q14676 2089 aaKnown RBP13.34□□□□□ -0.27
VPS35-210ENST00000568784 MCIDASD6RGH6 385 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 ATP6V1G2-DDX39BF2Z307 99 aa13.34□□□□□ -0.27
VPS35-210ENST00000568784 F13BP05160 661 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms