RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 NAV2Q8IVL1 2488 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 A0A1B0GWA3 101 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 CCT8L1PA6NM43 557 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 ZNF724A8MTY0 619 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 TMEM229AB2RXF0 380 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 M0R3H8 397 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 GPR171O14626 319 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 SHOX2O60902 331 aaPredicted RBP11.58□□□□□ -0.56
CLK3-224ENST00000568605 YES1P07947 543 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 CD247P20963 164 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 HTR2AP28223 471 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 MNAT1P51948 309 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 HOXC5Q00444 222 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 LIPEQ05469 1076 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 PDK3Q15120 406 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 NRF1Q16656 503 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 DUSP7Q16829 419 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 C1orf140Q5VVS0 124 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 ZNF613Q6PF04 617 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 SLC15A3Q8IY34 581 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 CCDC197Q8NCU1 140 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 VANGL1Q8TAA9 524 aaPredicted RBP11.58□□□□□ -0.56
CLK3-224ENST00000568605 FAM222BQ8WU58 562 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 SLC38A4Q969I6 547 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 EPYCQ99645 322 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 MCHR1Q99705 422 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 KCTD14Q9BQ13 255 aaPredicted RBP11.58□□□□□ -0.56
CLK3-224ENST00000568605 C12orf49Q9H741 205 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 PLSCR4Q9NRQ2 329 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 NDRG3Q9UGV2 375 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 TAGLN3Q9UI15 199 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 CELSR2Q9HCU4 2923 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 ABCA12Q86UK0 2595 aa11.58□□□□□ -0.56
CLK3-224ENST00000568605 A0A0B4J2E0 115 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 A0A1B0GX12 115 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 ZC3H12DA2A288 527 aaKnown RBP11.57□□□□□ -0.56
CLK3-224ENST00000568605 NME4O00746 187 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 CHP2O43745 196 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 OR2T1O43869 369 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 GMNNO75496 209 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 GOSR1O95249 250 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 FPR1P21462 350 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 SLC16A1P53985 500 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 PSME3P61289 254 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 MXRA7P84157 204 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 CEACAM7Q14002 265 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 OR1Q1Q15612 314 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 OR7A5Q15622 319 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 OTUD3Q5T2D3 398 aaPredicted RBP11.57□□□□□ -0.56
CLK3-224ENST00000568605 C8orf82Q6P1X6 216 aaPredicted RBP11.57□□□□□ -0.56
CLK3-224ENST00000568605 GALNT5Q7Z7M9 940 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 COMTD1Q86VU5 262 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 TUSC5Q8IXB3 177 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 DNAJA3Q96EY1 480 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 POLR2J2Q9GZM3 115 aaKnown RBP11.57□□□□□ -0.56
CLK3-224ENST00000568605 POLR2J3Q9H1A7 115 aaKnown RBP11.57□□□□□ -0.56
CLK3-224ENST00000568605 ADPRHL2Q9NX46 363 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 CMTM6Q9NX76 183 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 C6orf203Q9P0P8 240 aaPredicted RBP11.57□□□□□ -0.56
CLK3-224ENST00000568605 ABCD2Q9UBJ2 740 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 ITPR2Q14571 2701 aa11.57□□□□□ -0.56
CLK3-224ENST00000568605 IGKV3D-15A0A087WSY6 115 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 LIPT2A6NK58 231 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 CXCR6O00574 342 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 GCM2O75603 506 aaPredicted RBP11.56□□□□□ -0.56
CLK3-224ENST00000568605 VAMP5O95183 116 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 CGAP01215 116 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 IMPDH2P12268 514 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 IFNA8P32881 189 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 KDELR2P33947 212 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 GSK3BP49841 420 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 TLE4Q04727 773 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 BNIP2Q12982 314 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 MFSD13AQ14CX5 517 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 EXOC3L2Q2M3D2 409 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 CYBRD1Q53TN4 286 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 ENTPD8Q5MY95 495 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 FAM69AQ5T7M9 428 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 C16orf89Q6UX73 402 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 PGAM4Q8N0Y7 254 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 ZNF610Q8N9Z0 462 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 GPR32P1Q8NGA4 272 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 OR6T1Q8NGN1 323 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 MFSD8Q8NHS3 518 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 ADAMTS16Q8TE57 1224 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 SF3B5Q9BWJ5 86 aaKnown RBP11.56□□□□□ -0.56
CLK3-224ENST00000568605 PCDHAC1Q9H158 963 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 FAM53CQ9NYF3 392 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 ADA2Q9NZK5 511 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 ADAM21Q9UKJ8 722 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 NOSIPQ9Y314 301 aaKnown RBP11.56□□□□□ -0.56
CLK3-224ENST00000568605 SH3GLB1Q9Y371 365 aa11.56□□□□□ -0.56
CLK3-224ENST00000568605 NBPF19A0A087WUL8 3843 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 TRAV36DV7A0A075B6V5 113 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 A0A087WUJ7 227 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 SH3D21A4FU49 640 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 TRAPPC13A5PLN9 417 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 AQP7P3A6NL99 342 aa11.55□□□□□ -0.56
CLK3-224ENST00000568605 CPSF4LA6NMK7 179 aaKnown RBP11.55□□□□□ -0.56
CLK3-224ENST00000568605 C16orf97H3BN30 126 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms