RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 LYPD4Q6UWN0 246 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 WDR88Q6ZMY6 472 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 TMPRSS11FQ6ZWK6 438 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 TIGD4Q8IY51 512 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 PM20D2Q8IYS1 436 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 MAML2Q8IZL2 1156 aaPredicted RBP12.2□□□□□ -0.46
VPS4A-204ENST00000566354 C1orf216Q8TAB5 229 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 ADAMTS14Q8WXS8 1223 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 HSD17B8Q92506 261 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 YIPF5Q969M3 257 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 GAL3ST3Q96A11 431 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 MAP6Q96JE9 813 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 C4orf36Q96KX1 117 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 IFT27Q9BW83 186 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 OR51V1Q9H2C8 321 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SYNPO2LQ9H987 977 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 PRMT8Q9NR22 394 aaPredicted RBP12.2□□□□□ -0.46
VPS4A-204ENST00000566354 KLHL1Q9NR64 748 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 C20orf141Q9NUB4 165 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SLCO1C1Q9NYB5 712 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 ZMIZ1Q9ULJ6 1067 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 SLC35A3Q9Y2D2 325 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 RNF215Q9Y6U7 377 aa12.2□□□□□ -0.46
VPS4A-204ENST00000566354 TRBV23OR9-2A0A075B6M9 112 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 LINC00862A6NCI5 91 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 J3QLW9 94 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 LAMTOR5O43504 91 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 TNFP01375 233 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 DBIP07108 87 aaKnown RBP12.19□□□□□ -0.46
VPS4A-204ENST00000566354 TPOP07202 933 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF19P17023 458 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 FUT1P19526 365 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 HTR2AP28223 471 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 PEBP1P30086 187 aaKnown RBP12.19□□□□□ -0.46
VPS4A-204ENST00000566354 OR1Q1Q15612 314 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 RPE65Q16518 533 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 DUSP5Q16690 384 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 SLC25A35Q3KQZ1 300 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 GARNL3Q5VVW2 1013 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 DMKNQ6E0U4 476 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-204ENST00000566354 TMEM105Q8N8V8 129 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF680Q8NEM1 530 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 C17orf47Q8NEP4 570 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 OR4K14Q8NGD5 310 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 PFN4Q8NHR9 129 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 SLC2A12Q8TD20 617 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 PGLYRP3Q96LB9 341 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 C7orf50Q9BRJ6 194 aaKnown RBP12.19□□□□□ -0.46
VPS4A-204ENST00000566354 CACNG6Q9BXT2 260 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ERVMER34-1Q9H9K5 563 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 HAO2Q9NYQ3 351 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ABRACLQ9P1F3 81 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF175Q9Y473 711 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 CABIN1Q9Y6J0 2220 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 TRAV1-2A0A0B4J238 106 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 RIIAD1A6NNX1 92 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 FMO6PO60774 539 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 SERPINA3P01011 423 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 RAF1P04049 648 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 PRG2P13727 222 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 GIFP27352 417 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 HOXA6P31267 233 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 OR12D2P58182 307 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 GPR85P60893 370 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ACTC1P68032 377 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ACTA1P68133 377 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 TNFRSF17Q02223 184 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 C1orf61Q13536 156 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 COL9A2Q14055 689 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-204ENST00000566354 BMP8AQ7Z5Y6 402 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 PARGQ86W56 976 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 SFTPA2Q8IWL1 248 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 KCT2Q8NC54 265 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 OR4C6Q8NH72 309 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 GHSRQ92847 366 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 HGDQ93099 445 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 BPIFA2Q96DR5 249 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF578Q96N58 590 aaPredicted RBP12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF350Q9GZX5 532 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 ADGRL4Q9HBW9 690 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 SIGLEC7Q9Y286 467 aa12.19□□□□□ -0.46
VPS4A-204ENST00000566354 PI4KAP42356 2102 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 CENPVL1A0A0U1RR11 272 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 A0A1B0GVI7 797 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 STX11O75558 287 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 LYPD3O95274 346 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 SAGP10523 405 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-204ENST00000566354 NID1P14543 1247 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 RPS4Y1P22090 263 aaKnown RBP12.18□□□□□ -0.46
VPS4A-204ENST00000566354 ACVR1BP36896 505 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF85Q03923 595 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 RGS1Q08116 209 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 ILF3Q12906 894 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS4A-204ENST00000566354 BAMBIQ13145 260 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 MAPK14Q16539 360 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 COL28A1Q2UY09 1125 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 SLC22A10Q63ZE4 541 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 BAIAP2L2Q6UXY1 529 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 THSD4Q6ZMP0 1018 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 C1orf210Q8IVY1 113 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms