RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ADGRE4PQ86SQ3 457 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 CARM1Q86X55 608 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 RBM15BQ8NDT2 890 aaKnown RBP15.44■□□□□ 0.06
CLN3-217ENST00000565354 DNAJA4Q8WW22 397 aaPredicted RBP15.44■□□□□ 0.06
CLN3-217ENST00000565354 C3orf49Q96BT1 292 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 INTS12Q96CB8 462 aaKnown RBP15.44■□□□□ 0.06
CLN3-217ENST00000565354 DNAJA3Q96EY1 480 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 RSPO3Q9BXY4 272 aaPredicted RBP15.44■□□□□ 0.06
CLN3-217ENST00000565354 HDGFL3Q9Y3E1 203 aa15.44■□□□□ 0.06
CLN3-217ENST00000565354 A0A1B0GWA3 101 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 CPSF4LA6NMK7 179 aaKnown RBP15.43■□□□□ 0.06
CLN3-217ENST00000565354 RCBTB2O95199 551 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 TGM6O95932 706 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 SERPINA1P01009 418 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 GGT1P19440 569 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 CTSSP25774 331 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 HTR2AP28223 471 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 CEACAM8P31997 349 aaPredicted RBP15.43■□□□□ 0.06
CLN3-217ENST00000565354 OR2B6P58173 313 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 SELENOWP63302 87 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 OR1Q1Q15612 314 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 GTF2IRD2BQ6EKJ0 949 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 ULK3Q6PHR2 472 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 RINLQ6ZS11 566 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 TMPPEQ6ZT21 453 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 FKBP9P1Q75LS8 142 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 GTF2IRD2Q86UP8 949 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 GCNT2Q8N0V5 402 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 LSMEM1Q8N8F7 131 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 FAM156AQ8NDB6 213 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 OR6T1Q8NGN1 323 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 SLC47A1Q96FL8 570 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 PRR14Q9BWN1 585 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 OR11A1Q9GZK7 315 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 GSX1Q9H4S2 264 aaPredicted RBP15.43■□□□□ 0.06
CLN3-217ENST00000565354 COQ10BQ9H8M1 238 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 RPS6KA6Q9UK32 745 aa15.43■□□□□ 0.06
CLN3-217ENST00000565354 A8MVM7 634 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 FMO6PO60774 539 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 T-ENOLP0DO92 83 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 PNMTP11086 282 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 HSD17B1P14061 328 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 TNFRSF1BP20333 461 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 BMP5P22003 454 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 ENPP1P22413 925 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 OPRM1P35372 400 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 DIO1P49895 249 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 CRYBA2P53672 197 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 RAC3P60763 192 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 FOXD4Q12950 439 aaPredicted RBP15.42■□□□□ 0.06
CLN3-217ENST00000565354 BNIP2Q12982 314 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 ZNF239Q16600 458 aaKnown RBP15.42■□□□□ 0.06
CLN3-217ENST00000565354 SPATS1Q496A3 300 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 ENTPD8Q5MY95 495 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 DEF8Q6ZN54 512 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 ATG4DQ86TL0 474 aaPredicted RBP15.42■□□□□ 0.06
CLN3-217ENST00000565354 ARHGAP24Q8N264 748 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 CNEP1R1Q8N9A8 125 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 NAXEQ8NCW5 288 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 ROBO4Q8WZ75 1007 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 TAPBPLQ9BX59 468 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 SRXN1Q9BYN0 137 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 C12orf10Q9HB07 376 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 DLL4Q9NR61 685 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 MAGEL2Q9UJ55 1249 aa15.42■□□□□ 0.06
CLN3-217ENST00000565354 JMJD1CQ15652 2540 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 AHSA1O95433 338 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 PMS2P2O95744 297 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 FOSL1P15407 271 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 IFNA8P32881 189 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 IDUAP35475 653 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 CPOXP36551 454 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 OR1E2P47887 323 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 AGFG1P52594 562 aaKnown RBP15.41■□□□□ 0.06
CLN3-217ENST00000565354 CTBP2P56545 445 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 SIRPAP78324 504 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 EEF1A1P5Q5VTE0 462 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 ZNF613Q6PF04 617 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 CBLL1Q75N03 491 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 FCRLAQ7L513 359 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 RBM45Q8IUH3 476 aaKnown RBP15.41■□□□□ 0.06
CLN3-217ENST00000565354 OR4D11Q8NGI4 311 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 ARL5BQ96KC2 179 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 WFDC6Q9BQY6 131 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 SFXN3Q9BWM7 321 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 ZNF629Q9UEG4 869 aaPredicted RBP15.41■□□□□ 0.06
CLN3-217ENST00000565354 CD300AQ9UGN4 299 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 ST6GALNAC2Q9UJ37 374 aa15.41■□□□□ 0.06
CLN3-217ENST00000565354 SAMD4AQ9UPU9 718 aaKnown RBP15.41■□□□□ 0.06
CLN3-217ENST00000565354 KIAA1549Q9HCM3 1950 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 IGHV3-15A0A0B4J1V0 119 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 A0A0B4J2E0 115 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 A0A1B0GX12 115 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 GYG2O15488 501 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 AQP8O94778 261 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 STAMBPO95630 424 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 GTF2E2P29084 291 aaKnown RBP15.4■□□□□ 0.06
CLN3-217ENST00000565354 MSX2P35548 267 aaPredicted RBP15.4■□□□□ 0.06
CLN3-217ENST00000565354 TAS2R41P59536 307 aa15.4■□□□□ 0.06
CLN3-217ENST00000565354 SLC35A1P78382 337 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms