RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 LIPT2A6NK58 231 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 OVOL3O00110 214 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 PDLIM1O00151 329 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 ZNF208O43345 1280 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 PAX1P15863 534 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 GGT1P19440 569 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 ANXA11P50995 505 aaKnown RBP15.6■□□□□ 0.09
HDDC3-205ENST00000559898 LRRC74AQ0VAA2 488 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 SLC17A1Q14916 467 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 GABRA6Q16445 453 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 LIN52Q52LA3 116 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 TSPO2Q5TGU0 170 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 PRSS57Q6UWY2 283 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 CASP12Q6UXS9 341 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 WDR31Q8NA23 367 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 SMAP2Q8WU79 429 aaPredicted RBP15.6■□□□□ 0.09
HDDC3-205ENST00000559898 DDIT4LQ96D03 193 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 C7orf26Q96N11 449 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 WFDC6Q9BQY6 131 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 ESRP2Q9H6T0 727 aaKnown RBP15.6■□□□□ 0.09
HDDC3-205ENST00000559898 TCF7L2Q9NQB0 619 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 EMC3Q9P0I2 261 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 SEC14L4Q9UDX3 406 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 TRAPPC4Q9Y296 219 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 SLC25A15Q9Y619 301 aa15.6■□□□□ 0.09
HDDC3-205ENST00000559898 NSD1Q96L73 2696 aaPredicted RBP15.6■□□□□ 0.09
HDDC3-205ENST00000559898 OR5H1A6NKK0 313 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 CLIC1O00299 241 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 NR5A2O00482 541 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 ABCD4O14678 606 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 HEXAP06865 529 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 MAGEA8P43361 318 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 HTR3AP46098 478 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 CLK1P49759 484 aaKnown RBP15.59■□□□□ 0.09
HDDC3-205ENST00000559898 ZNF83P51522 516 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 CRISP3P54108 245 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 ATP5J2P56134 94 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 SLC35A1P78382 337 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 TXNL4AP83876 142 aaKnown RBP15.59■□□□□ 0.09
HDDC3-205ENST00000559898 TNK1Q13470 666 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 GLIPR1L2Q4G1C9 344 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 TIMM23BQ5SRD1 257 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 OTUD3Q5T2D3 398 aaPredicted RBP15.59■□□□□ 0.09
HDDC3-205ENST00000559898 B3GLCTQ6Y288 498 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 MSANTD1Q6ZTZ1 278 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 FBXW5Q969U6 566 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 C3orf49Q96BT1 292 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 ZHX1-C8orf76Q96EF9 292 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 ATP6V1G3Q96LB4 118 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 RMND5AQ9H871 391 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 CCDC167Q9P0B6 97 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 VAPAQ9P0L0 249 aa15.59■□□□□ 0.09
HDDC3-205ENST00000559898 GDF2Q9UK05 429 aaPredicted RBP15.59■□□□□ 0.09
HDDC3-205ENST00000559898 A0A096LPI6 279 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 CCT8L1PA6NM43 557 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 TPST1O60507 370 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 MRPL33O75394 65 aaKnown RBP15.58■□□□□ 0.08
HDDC3-205ENST00000559898 CXCR1P25024 350 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 AQP5P55064 265 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 RPS4XP62701 263 aaKnown RBP15.58■□□□□ 0.08
HDDC3-205ENST00000559898 RNF220Q5VTB9 566 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 BLOC1S3Q6QNY0 202 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 LINGO2Q7L985 606 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 NFKBIDQ8NI38 313 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 LRRC8CQ8TDW0 803 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 SPATA9Q9BWV2 254 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 MALT1Q9UDY8 824 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 NAV3Q8IVL0 2385 aa15.58■□□□□ 0.08
HDDC3-205ENST00000559898 TRBV5-3A0A0A0MS03 114 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 A0A0G2JPF8 293 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 CIB4A0PJX0 185 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 TMEM229AB2RXF0 380 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 HNRNPCL2B2RXH8 293 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 HNRNPCL3B7ZW38 293 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 E7EQL1 145 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 POLR3GO15318 223 aaPredicted RBP15.57■□□□□ 0.08
HDDC3-205ENST00000559898 DNPH1O43598 174 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 HNRNPCL1O60812 293 aaKnown RBP15.57■□□□□ 0.08
HDDC3-205ENST00000559898 NPIPB7O75200 414 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 IGHV4-39P01824 125 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 HNRNPCL4P0DMR1 293 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 BMP2P12643 396 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 HTR2AP28223 471 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 IDUAP35475 653 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 MRPL19P49406 292 aaKnown RBP15.57■□□□□ 0.08
HDDC3-205ENST00000559898 CDH11P55287 796 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 EGR4Q05215 589 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 KRTAP1-1Q07627 177 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 GNA13Q14344 377 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 ZNF311Q5JNZ3 666 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 LRIF1Q5T3J3 769 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 WBP2NLQ6ICG8 309 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 PAQR6Q6TCH4 344 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 KDM8Q8N371 416 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 OR9K2Q8NGE7 335 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 HTRA1Q92743 480 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 PMM1Q92871 262 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 SPDL1Q96EA4 605 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 PTDSS2Q9BVG9 487 aa15.57■□□□□ 0.08
HDDC3-205ENST00000559898 CXorf56Q9H5V9 222 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms