RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TIMP3P35625 211 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 LIMS1P48059 325 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 KCNJ5P48544 419 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 PTH2RP49190 550 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 CDH15P55291 814 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 ISL1P61371 349 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 SPIBQ01892 262 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 TNK1Q13470 666 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 ACKR1Q16570 336 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 ACSF3Q4G176 576 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-230ENST00000557427 C6orf141Q5SZD1 244 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 TMEM107Q6UX40 140 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 KRT73Q86Y46 540 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 SLC44A2Q8IWA5 706 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-230ENST00000557427 ATG16L2Q8NAA4 619 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 OR4N2Q8NGD1 307 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 RAB8BQ92930 207 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 ZNF566Q969W8 418 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 ADOQ96SZ5 270 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 PITX2Q99697 317 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 CCL19Q99731 98 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 BTBD2Q9BX70 525 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 GABARAPL3Q9BY60 117 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 GSX2Q9BZM3 304 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 SLC6A15Q9H2J7 730 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 FOLH1BQ9HBA9 442 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 KRT84Q9NSB2 600 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 NTMQ9P121 344 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 BLOC1S6Q9UL45 172 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 FAM32AQ9Y421 112 aaKnown RBP11.26□□□□□ -0.61
SHMT2-230ENST00000557427 TESMINQ9Y4I5 508 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 GPC6Q9Y625 555 aaPredicted RBP11.26□□□□□ -0.61
SHMT2-230ENST00000557427 DSCAMO60469 2012 aa11.26□□□□□ -0.61
SHMT2-230ENST00000557427 RAI1Q7Z5J4 1906 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-230ENST00000557427 PRAMEF27A3QJZ7 478 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 SH3D21A4FU49 640 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 FRG2CA6NGY1 282 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 PLOD3O60568 738 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 ICOSLGO75144 302 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 FESP07332 822 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 CT45A8P0DMV1 189 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 CT45A9P0DMV2 189 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 ETS2P15036 469 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 TNFRSF1BP20333 461 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 CRHBPP24387 322 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 ELK4P28324 431 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 TTKP33981 857 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 MC3RP41968 323 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 OR1E2P47887 323 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 CLK3P49761 638 aaKnown RBP11.25□□□□□ -0.61
SHMT2-230ENST00000557427 CRISP3P54108 245 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 SH3BGRP55822 239 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-230ENST00000557427 ESRRGP62508 458 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 RUNX1T1Q06455 604 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 CD47Q08722 323 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 DUSP7Q16829 419 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 CT45A2Q5DJT8 189 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 RPS26P11Q5JNZ5 115 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-230ENST00000557427 ZNF773Q6PK81 442 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 ALDH16A1Q8IZ83 802 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 SMYD1Q8NB12 490 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 OR10G2Q8NGC3 310 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 IGFBPL1Q8WX77 278 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 PROX1Q92786 737 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 HGDQ93099 445 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 ELP4Q96EB1 424 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 COL21A1Q96P44 957 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 APOL4Q9BPW4 351 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 SPATA5L1Q9BVQ7 753 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 RIBC2Q9H4K1 309 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 ZNF703Q9H7S9 590 aaPredicted RBP11.25□□□□□ -0.61
SHMT2-230ENST00000557427 GALNT9Q9HCQ5 603 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 RYDENQ9NUL5 291 aaKnown RBP11.25□□□□□ -0.61
SHMT2-230ENST00000557427 KLRF1Q9NZS2 232 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 NDRG4Q9ULP0 352 aaKnown RBP11.25□□□□□ -0.61
SHMT2-230ENST00000557427 SLC6A5Q9Y345 797 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 OR10H1Q9Y4A9 318 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 COMMD3-BMI1R4GMX3 469 aa11.25□□□□□ -0.61
SHMT2-230ENST00000557427 A0A0G2JPF8 293 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 DEFB108AA8MXU0 73 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 HNRNPCL2B2RXH8 293 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 HNRNPCL3B7ZW38 293 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 EEF1E1-BLOC1S5C9J1V9 151 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 TO15178 435 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 EEF1E1O43324 174 aaKnown RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 ABCB7O75027 752 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 SLITRK5O94991 958 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 HMGN2P05204 90 aaKnown RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 CCDC159P0C7I6 412 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 HNRNPCL4P0DMR1 293 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 NR2F1P10589 423 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 JUNBP17275 347 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 PAX7P23759 505 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 KRT20P35900 424 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 CDH12P55289 794 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 CXCR4P61073 352 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 ZNF155Q12901 538 aaPredicted RBP11.24□□□□□ -0.61
SHMT2-230ENST00000557427 LAPTM4AQ15012 233 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 SYPL1Q16563 259 aa11.24□□□□□ -0.61
SHMT2-230ENST00000557427 MICAQ29983 383 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms