RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 IGFBP1P08833 259 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 CD63P08962 238 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 SAGP10523 405 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 MYL12AP19105 171 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 CFL1P23528 166 aaKnown RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 PLAURQ03405 335 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 PLCXD2Q0VAA5 305 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 EFR3AQ14156 821 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 GLYR1Q49A26 553 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 CDONQ4KMG0 1287 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 PRAMEF17Q5VTA0 474 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 NXNL2Q5VZ03 156 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 PWWP2BQ6NUJ5 590 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 SMARCD3Q6STE5 483 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 LINC00114Q6XXX2 140 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ATCAYQ86WG3 371 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ZSCAN1Q8NBB4 408 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 PROKR2Q8NFJ6 384 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 OR8D4Q8NGM9 314 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 OR4C3Q8NH37 302 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 NUBPLQ8TB37 319 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 GRHL3Q8TE85 626 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 FGF11Q92914 225 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 AIFM2Q9BRQ8 373 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 NUDT9Q9BW91 350 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 DPH1Q9BZG8 443 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 SEMA4CQ9C0C4 833 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 LAT2Q9GZY6 243 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ISYNA1Q9NPH2 558 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 TOR4AQ9NXH8 423 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 FLRT3Q9NZU0 649 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ICAM5Q9UMF0 924 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 EXOSC1Q9Y3B2 195 aaKnown RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 AUP1Q9Y679 476 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 V9GYH0 126 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ADAMTS20P59510 1910 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 TUBAL3A6NHL2 446 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 PATE3B3GLJ2 98 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 IDSB3KWA1 339 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ALG1L2C9J202 215 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 MYL12BO14950 172 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 PIP5K1CO60331 668 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 REM1O75628 298 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 LDOC1O95751 146 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 NAT1P18440 290 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ACP1P24666 158 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 SLC6A6P31641 620 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 MPLP40238 635 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 SKP2Q13309 424 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 COL9A2Q14055 689 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 NNATQ16517 81 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 CARTPTQ16568 116 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 HSD17B12Q53GQ0 312 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF385CQ66K41 422 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 BICRALQ6AI39 1079 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 RTL4Q6ZR62 310 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 C9orf40Q8IXQ3 194 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 CADM2Q8N3J6 435 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 LNX2Q8N448 690 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 ZNF441Q8N8Z8 693 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 OR5L2Q8NGL0 311 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 PHOSPHO1Q8TCT1 267 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 COQ7Q99807 217 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 CHCHD6Q9BRQ6 235 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 TMEM43Q9BTV4 400 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 CENPOQ9BU64 300 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 OR51E2Q9H255 320 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 UBQLN3Q9H347 655 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 FGF20Q9NP95 211 aaPredicted RBP11.59□□□□□ -0.55
SHMT2-229ENST00000557348 FSCN3Q9NQT6 498 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 SLC22A11Q9NSA0 550 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 SIGLEC7Q9Y286 467 aa11.59□□□□□ -0.55
SHMT2-229ENST00000557348 COL5A1P20908 1838 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-229ENST00000557348 LOC100506127A0A0U1RQW1 187 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 OR6C70A6NIJ9 312 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 TSPAN2O60636 221 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 SLC43A1O75387 559 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 IFNGP01579 166 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 KLK3P07288 261 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-229ENST00000557348 NAGAP17050 411 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 PRKACBP22694 351 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 MTNR1AP48039 350 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 EMP2P54851 167 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 LSM11P83369 360 aaKnown RBP eCLIP11.58□□□□□ -0.56
SHMT2-229ENST00000557348 ZFP36L1Q07352 338 aaKnown RBP11.58□□□□□ -0.56
SHMT2-229ENST00000557348 MAB21L1Q13394 359 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 SLC30A6Q6NXT4 461 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 ARHGAP11AQ6P4F7 1023 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 PLET1Q6UQ28 207 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 WDR88Q6ZMY6 472 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 DBX2Q6ZNG2 339 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 ANKRD37Q7Z713 158 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 OAFQ86UD1 273 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 SGTBQ96EQ0 304 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 LPAR4Q99677 370 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 LRFN3Q9BTN0 628 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 ASPNQ9BXN1 380 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 WDR70Q9NW82 654 aa11.58□□□□□ -0.56
SHMT2-229ENST00000557348 GPN3Q9UHW5 284 aaPredicted RBP11.58□□□□□ -0.56
SHMT2-229ENST00000557348 SPEF1Q9Y4P9 236 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms