RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ZGRF1Q86YA3 2104 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 TRAV36DV7A0A075B6V5 113 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 IGHV3-15A0A0B4J1V0 119 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 A0A1W2PRQ8 180 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 LIPT2A6NK58 231 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 FTCDNL1E5RQL4 147 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 H3BNX3 289 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 SULT2B1O00204 365 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 RAMP1O60894 148 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 AQP8O94778 261 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 FPR1P21462 350 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 ENPP1P22413 925 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 CBLP22681 906 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 FKBP2P26885 142 aaKnown RBP11.48□□□□□ -0.57
SHMT2-227ENST00000557269 ACVR2AP27037 513 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 IDUAP35475 653 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 CA7P43166 264 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 LIMS1P48059 325 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 CLK1P49759 484 aaKnown RBP11.48□□□□□ -0.57
SHMT2-227ENST00000557269 OR2B6P58173 313 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 DGCR6Q14129 220 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 PON3Q15166 354 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 OR7A5Q15622 319 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 SGCBQ16585 318 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 FGD3Q5JSP0 725 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 C1orf185Q5T7R7 199 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 ATCAYQ86WG3 371 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 LRRC17Q8N6Y2 441 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 OR4C15Q8NGM1 316 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 FNDC9Q8TBE3 224 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 SLC7A13Q8TCU3 470 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 TMEM239Q8WW34 195 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 ROBO4Q8WZ75 1007 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 MOGAT1Q96PD6 335 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 UCN2Q96RP3 112 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 ARMC1Q9NVT9 282 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 CLCF1Q9UBD9 225 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 STOML1Q9UBI4 398 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 SEC14L4Q9UDX3 406 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 HDGFL3Q9Y3E1 203 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF462Q96JM2 2506 aa11.48□□□□□ -0.57
SHMT2-227ENST00000557269 FIGNL2A6NMB9 653 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 SMAD9O15198 467 aaKnown RBP11.47□□□□□ -0.57
SHMT2-227ENST00000557269 WDR1O75083 606 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 TOXO94900 526 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 GADD45GO95257 159 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 AHSA1O95433 338 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 PMS2P2O95744 297 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 BGLAPP02818 100 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 GLI4P10075 376 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 PLA2G2AP14555 144 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 GABRA1P14867 456 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 FUT1P19526 365 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 RBM34P42696 430 aaKnown RBP11.47□□□□□ -0.57
SHMT2-227ENST00000557269 IST1P53990 364 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 RAC3P60763 192 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 RPS3AP61247 264 aaKnown RBP11.47□□□□□ -0.57
SHMT2-227ENST00000557269 LAPTM4AQ15012 233 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 EXOC3L2Q2M3D2 409 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 NSUN5P2Q63ZY6 315 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 OR2T5Q6IEZ7 315 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF730Q6ZMV8 503 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 TMEM179BQ7Z7N9 219 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 NRMQ8IXM6 262 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 C9orf106Q8NAJ2 232 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 OR2T29Q8NH02 315 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 ACOT11Q8WXI4 607 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-227ENST00000557269 SLC25A36Q96CQ1 311 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 HS6ST2Q96MM7 605 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 ALPK1Q96QP1 1244 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 DMRTA2Q96SC8 542 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 TTYH2Q9BSA4 534 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 TP63Q9H3D4 680 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-227ENST00000557269 NTN4Q9HB63 628 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 TRAPPC4Q9Y296 219 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 MEMO1Q9Y316 297 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 AP4S1Q9Y587 144 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 LYVE1Q9Y5Y7 322 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 U3KQV3 271 aa11.47□□□□□ -0.57
SHMT2-227ENST00000557269 SH3PXD2BA1X283 911 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 CD8B2A6NJW9 211 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 SLC22A20A6NK97 555 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 ENO4A6NNW6 628 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 TNFRSF11BO00300 401 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 FZD7O75084 574 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 AKR7A3O95154 331 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 CH25HO95992 272 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 CST1P01037 141 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 MAKP20794 623 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 IFNA8P32881 189 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 P2RY4P51582 365 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 AGFG1P52594 562 aaKnown RBP11.46□□□□□ -0.57
SHMT2-227ENST00000557269 HMGA2P52926 109 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 NUP107P57740 925 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 H3F3AP84243 136 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF74Q16587 644 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 ZNF239Q16600 458 aaKnown RBP11.46□□□□□ -0.57
SHMT2-227ENST00000557269 PDSS1Q5T2R2 415 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 FAM69AQ5T7M9 428 aa11.46□□□□□ -0.57
SHMT2-227ENST00000557269 HMBOX1Q6NT76 420 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms