RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 RFC4P35249 363 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 MDH2P40926 338 aaKnown RBP3.81□□□□□ -1.8
SCFD1-209ENST00000553280 TGM3Q08188 693 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 LRRC66Q68CR7 880 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 FBXL22Q6P050 247 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 LRRC31Q6UY01 552 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 HPS6Q86YV9 775 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 NUDCD3Q8IVD9 361 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 OR4F6Q8NGB9 312 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 ZPLD1Q8TCW7 415 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.81□□□□□ -1.8
SCFD1-209ENST00000553280 FGGYQ96C11 551 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 TM4SF19Q96DZ7 209 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 SIGLEC12Q96PQ1 595 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 PANX2Q96RD6 677 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 ATOH8Q96SQ7 321 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 CHP1Q99653 195 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 KLHDC3Q9BQ90 382 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 C19orf24Q9BVV8 132 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 NMUR2Q9GZQ4 415 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 EXO5Q9H790 373 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 THUMPD1Q9NXG2 353 aaKnown RBP3.81□□□□□ -1.8
SCFD1-209ENST00000553280 TMCO1Q9UM00 188 aa3.81□□□□□ -1.8
SCFD1-209ENST00000553280 RPL36Q9Y3U8 105 aaKnown RBP3.81□□□□□ -1.8
SCFD1-209ENST00000553280 TDRD15B5MCY1 1934 aaKnown RBP3.81□□□□□ -1.8
SCFD1-209ENST00000553280 WDR19Q8NEZ3 1342 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 SH3TC1Q8TE82 1336 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 FRMPD3Q5JV73 1810 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 TCP11X1B4DZS4 312 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 WWP2O00308 870 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 UGT1A9O60656 530 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 OXSR1O95747 527 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-209ENST00000553280 TMEM50AO95807 157 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 MMP1P03956 469 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 P04436 131 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 ASGR1P07306 291 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 TNNI1P19237 187 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 NPR2P20594 1047 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 ZP3P21754 424 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 CHMLP26374 656 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 UGT1A3P35503 534 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 BIDP55957 195 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 PPIL2Q13356 520 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 DGUOKQ16854 277 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 MICBQ29980 383 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 NSUN5P1Q3KNT7 163 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 PAGE2BQ5JRK9 111 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 KLF17Q5JT82 389 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-209ENST00000553280 GPRC6AQ5T6X5 926 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 OR2G6Q5TZ20 316 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 OR52E8Q6IFG1 317 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 WDR74Q6RFH5 385 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-209ENST00000553280 HSDL2Q6YN16 418 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 FRA10AC1Q70Z53 315 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 PGAP1Q75T13 922 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 PSTKQ8IV42 348 aaKnown RBP3.8□□□□□ -1.8
SCFD1-209ENST00000553280 SKA3Q8IX90 412 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 OR4C5Q8NGB2 326 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 OR13F1Q8NGS4 319 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 DNAJA4Q8WW22 397 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-209ENST00000553280 PAGE5Q96GU1 130 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 VSIG2Q96IQ7 327 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 PLEKHA8Q96JA3 519 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 PGLYRP4Q96LB8 373 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 MBOAT4Q96T53 435 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 GAL3ST1Q99999 423 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 CENPKQ9BS16 269 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 SUDS3Q9H7L9 328 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-209ENST00000553280 GLRX2Q9NS18 164 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 PSMC3IPQ9P2W1 217 aaPredicted RBP3.8□□□□□ -1.8
SCFD1-209ENST00000553280 APOBEC3BQ9UH17 382 aaKnown RBP3.8□□□□□ -1.8
SCFD1-209ENST00000553280 DCDC2Q9UHG0 476 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 N6AMT1Q9Y5N5 214 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 CSAG2Q9Y5P2 127 aa3.8□□□□□ -1.8
SCFD1-209ENST00000553280 IGHV1OR15-1A0A075B7D0 117 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 IGHV7-81A0A0B4J1V7 117 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 SERTM2A0A1B0GWG4 89 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 LRRIQ4A6NIV6 560 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 OR5B21A6NL26 309 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 HIP1O00291 1037 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 LYPLA1O75608 230 aaPredicted RBP3.79□□□□□ -1.8
SCFD1-209ENST00000553280 CTAG2O75638 210 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 STAMBPO95630 424 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 CGAP01215 116 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 FGF4P08620 206 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 OR8U8P0C7N1 319 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 HNRNPH3P31942 346 aaKnown RBP3.79□□□□□ -1.8
SCFD1-209ENST00000553280 KPNA2P52292 529 aaKnown RBP3.79□□□□□ -1.8
SCFD1-209ENST00000553280 SCRN3Q0VDG4 424 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 OR5I1Q13606 314 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 GNMTQ14749 295 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 ARHGAP19Q14CB8 494 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 GSG1Q2KHT4 349 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 C15orf32Q32M92 178 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 SPANXN2Q5MJ10 180 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 ATAD3CQ5T2N8 411 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 PAMR1Q6UXH9 720 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 PPP1R27Q86WC6 154 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 MARCH9Q86YJ5 346 aa3.79□□□□□ -1.8
SCFD1-209ENST00000553280 GTPBP8Q8N3Z3 284 aaPredicted RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms