RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 HEPHL1Q6MZM0 1159 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 NIPAL3Q6P499 406 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 OR4M2Q8NGB6 313 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 OR5H6Q8NGV6 325 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 PHF21AQ96BD5 680 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 KTI12Q96EK9 354 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-215ENST00000552823 DHRS1Q96LJ7 313 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 JSRP1Q96MG2 331 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-215ENST00000552823 ARHGAP9Q9BRR9 750 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 NUDT9Q9BW91 350 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 TSPAN10Q9H1Z9 355 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-215ENST00000552823 DUSP22Q9NRW4 184 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 NDUFB11Q9NX14 153 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 DNAJB12Q9NXW2 375 aaKnown RBP5.13□□□□□ -1.59
LIMA1-215ENST00000552823 PCOLCE2Q9UKZ9 415 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 PLCL2Q9UPR0 1127 aa5.13□□□□□ -1.59
LIMA1-215ENST00000552823 OR6C68A6NDL8 312 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CCDC182A6NF36 153 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 DCTN6O00399 190 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TNFSF14O43557 240 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 NDUFB5O43674 189 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 AGR2O95994 175 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 IFNGP01579 166 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 MAS1P04201 325 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 HIST1H2ABP04908 130 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ATP1B1P05026 303 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SBK2P0C263 348 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ELK1P19419 428 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CD27P26842 260 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 HTR1FP30939 366 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SLC6A6P31641 620 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ADH7P40394 386 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ACAA2P42765 397 aaKnown RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CAPZBP47756 277 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ARRB1P49407 418 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 PSPHP78330 225 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ZNF45Q02386 682 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 PLCXD2Q0VAA5 305 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TOMM20Q15388 145 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ETFDHQ16134 617 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TBRG1Q3YBR2 411 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 C3orf38Q5JPI3 329 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 C6orf183Q5T699 404 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 FHL5Q5TD97 284 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ZNF517Q6ZMY9 492 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 HIST3H2AQ7L7L0 130 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 DPY19L4Q7Z388 723 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 JAZF1Q86VZ6 243 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 RAB43Q86YS6 212 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 LNX2Q8N448 690 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 PCNPQ8WW12 178 aaKnown RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 HIST1H2ACQ93077 130 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 NPAS1Q99742 590 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 MICU1Q9BPX6 476 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SYT4Q9H2B2 425 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 GALNT9Q9HCQ5 603 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 LYRM4Q9HD34 91 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 APMAPQ9HDC9 416 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ENAMQ9NRM1 1142 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 PLSCR3Q9NRY6 295 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TBC1D24Q9ULP9 559 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 COPS3Q9UNS2 423 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 KIAA1549LQ6ZVL6 1849 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CUL9Q8IWT3 2517 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 PCNX1Q96RV3 2341 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 BCAT2O15382 392 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 RNF13O43567 381 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 LANCL1O43813 399 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SLC25A12O75746 678 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 NDUFB2O95178 105 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 OR6A2O95222 327 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 UTS2O95399 124 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TFP02787 698 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CSF3P09919 207 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SRFP11831 508 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 S1PR1P21453 382 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CXCR1P25024 350 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 GAS1P54826 345 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 FOXK1P85037 733 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SCN1BQ07699 218 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SF3B4Q15427 424 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SFRP4Q6FHJ7 346 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 PLET1Q6UQ28 207 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TMEM91Q6ZNR0 172 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 QSOX2Q6ZRP7 698 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SYT13Q7L8C5 426 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 MDGA2Q7Z553 956 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 YIPF7Q8N8F6 280 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 POGLUT1Q8NBL1 392 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 VSTM2LQ96N03 204 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 EMC6Q9BV81 110 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 DUSP15Q9H1R2 295 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TP63Q9H3D4 680 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-215ENST00000552823 FBRSQ9HAH7 460 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 MCCC2Q9HCC0 563 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 SLC2A4RGQ9NR83 387 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 CENPMQ9NSP4 180 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 ANKRD10Q9NXR5 420 aa5.12□□□□□ -1.59
LIMA1-215ENST00000552823 TEKT2Q9UIF3 430 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms