RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 DDIT4LQ96D03 193 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 ZG16BQ96DA0 208 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 BOD1Q96IK1 185 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 KCNK17Q96T54 332 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 NAA11Q9BSU3 229 aaPredicted RBP11.27□□□□□ -0.61
PTCH1-218ENST00000548945 BEX2Q9BXY8 128 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 DPY30Q9C005 99 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 OR11A1Q9GZK7 315 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 PIF1Q9H611 641 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 UPB1Q9UBR1 384 aa11.27□□□□□ -0.61
PTCH1-218ENST00000548945 TMED7-TICAM2A0A0A6YYA0 188 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 A0A1W2PR80 420 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 WNT11O96014 354 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 USF1P22415 310 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-218ENST00000548945 PAX7P23759 505 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 MPGP29372 298 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 SLC1A3P43003 542 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 IDH2P48735 452 aaKnown RBP11.26□□□□□ -0.61
PTCH1-218ENST00000548945 CLNS1AP54105 237 aaKnown RBP11.26□□□□□ -0.61
PTCH1-218ENST00000548945 FOXG1P55316 489 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-218ENST00000548945 MAGOHP61326 146 aaKnown RBP11.26□□□□□ -0.61
PTCH1-218ENST00000548945 PHC1P78364 1004 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 PLAURQ03405 335 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 PAQR6Q6TCH4 344 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 NUDCD3Q8IVD9 361 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 KIRREL3Q8IZU9 778 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 OR52E4Q8NGH9 312 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 RAB8BQ92930 207 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 TMEM45BQ96B21 275 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 TRNT1Q96Q11 434 aaKnown RBP11.26□□□□□ -0.61
PTCH1-218ENST00000548945 SF3B5Q9BWJ5 86 aaKnown RBP11.26□□□□□ -0.61
PTCH1-218ENST00000548945 AKTIPQ9H8T0 292 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 OBP2BQ9NPH6 170 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 SLC7A10Q9NS82 523 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-218ENST00000548945 TMED7Q9Y3B3 224 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 ATP23Q9Y6H3 246 aa11.26□□□□□ -0.61
PTCH1-218ENST00000548945 AGAP5A6NIR3 686 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 NDUFS8O00217 210 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 HMGN4O00479 90 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 TYROBPO43914 113 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 IGHV4-31P0DP07 118 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 IMPDH2P12268 514 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 UQCRBP14927 111 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 CHI3L1P36222 383 aaPredicted RBP11.25□□□□□ -0.61
PTCH1-218ENST00000548945 GZMKP49863 264 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 ANXA11P50995 505 aaKnown RBP11.25□□□□□ -0.61
PTCH1-218ENST00000548945 PRPS1P60891 318 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 GNA13Q14344 377 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 GPAT3Q53EU6 434 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 ABHD12BQ7Z5M8 362 aaPredicted RBP11.25□□□□□ -0.61
PTCH1-218ENST00000548945 ANKRD46Q86W74 232 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 POMGNT2Q8NAT1 580 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 CNOT9Q92600 299 aaKnown RBP11.25□□□□□ -0.61
PTCH1-218ENST00000548945 CCDC115Q96NT0 180 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 SLC35A5Q9BS91 424 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 SHARPINQ9H0F6 387 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 MANSC1Q9H8J5 431 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 MARCOQ9UEW3 520 aaPredicted RBP11.25□□□□□ -0.61
PTCH1-218ENST00000548945 OSGIN1Q9UJX0 560 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 FKBP7Q9Y680 259 aa11.25□□□□□ -0.61
PTCH1-218ENST00000548945 TMEM72A0PK05 275 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 PRAMEF27A3QJZ7 478 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 CLDN24A6NM45 220 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 VWC2LB2RUY7 222 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 BIRC5O15392 142 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 CPSF4O95639 269 aaKnown RBP11.24□□□□□ -0.61
PTCH1-218ENST00000548945 SERPINE1P05121 402 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 RPS4Y1P22090 263 aaKnown RBP11.24□□□□□ -0.61
PTCH1-218ENST00000548945 TACR3P29371 465 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 LSM11P83369 360 aaKnown RBP eCLIP11.24□□□□□ -0.61
PTCH1-218ENST00000548945 SLC25A3Q00325 362 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 PDCD2Q16342 344 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-218ENST00000548945 GSTA3Q16772 222 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 SWI5Q1ZZU3 235 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 TSPO2Q5TGU0 170 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 KLHL24Q6TFL4 600 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 LRRC74BQ6ZQY2 392 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 ZNF440Q8IYI8 595 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 TRIML2Q8N7C3 387 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 ZNF781Q8N8C0 355 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 HTRA1Q92743 480 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 C1QTNF6Q9BXI9 259 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 ADAM19Q9H013 955 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 SLC38A1Q9H2H9 487 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 MTHFD2LQ9H903 347 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-218ENST00000548945 MOV10Q9HCE1 1003 aaKnown RBP11.24□□□□□ -0.61
PTCH1-218ENST00000548945 MYOZ1Q9NP98 299 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-218ENST00000548945 BTNL2Q9UIR0 455 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 RAP2CQ9Y3L5 183 aa11.24□□□□□ -0.61
PTCH1-218ENST00000548945 CFAP73A6NFT4 308 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 OR6C65A6NJZ3 312 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 E9PBE3 544 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 ATP6V1G2-DDX39BF2Z307 99 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 AP3D1O14617 1153 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 POLR3GO15318 223 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-218ENST00000548945 LMX1BO60663 402 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 GPIP06744 558 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 CREB1P16220 341 aa11.23□□□□□ -0.61
PTCH1-218ENST00000548945 CCNA2P20248 432 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms