RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 PLK5Q496M5 336 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CCNJQ5T5M9 372 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 AFMIDQ63HM1 303 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 RTL10Q7L3V2 364 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 FCRLAQ7L513 359 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 CCDC190Q86UF4 302 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 MRPL43Q8N983 215 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 OR2L3Q8NG85 312 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 OR9A1PQ8NGU1 263 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 GNPDA2Q8TDQ7 276 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 C4orf36Q96KX1 117 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 TREX2Q9BQ50 279 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 ATG5Q9H1Y0 275 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 WDR26Q9H7D7 661 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 PRMT8Q9NR22 394 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 SDHAF2Q9NX18 166 aa5.08□□□□□ -1.6
LIMA1-203ENST00000547825 LYARQ9NX58 379 aaKnown RBP5.08□□□□□ -1.6
LIMA1-203ENST00000547825 HYKKA2RU49 373 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 RAB19A4D1S5 217 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 H3BQ06 376 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 XKRYO14609 159 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 LINC01565O15544 149 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 MRPS14O60783 128 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF254O75437 659 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TSPAN12O95859 305 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 HMGN2P05204 90 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SFTPBP07988 381 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CBSLP0DN79 551 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF35P13682 527 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GPX2P18283 190 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CBSP35520 551 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SLC1A3P43003 542 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 EPHA5P54756 1037 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR10A3P58181 314 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 FGL1Q08830 312 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 LMAN2Q12907 356 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ARFRP1Q13795 201 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 NFATC4Q14934 902 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 KIAA0040Q15053 153 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SEC23BQ15437 767 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 FAM74A1Q5RGS3 127 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SLX4IPQ5VYV7 408 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TMC8Q8IU68 726 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GTPBP8Q8N3Z3 284 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CREB3L4Q8TEY5 395 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PAQR8Q8TEZ7 354 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 NSMAFQ92636 917 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SLC25A46Q96AG3 418 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 FOXN4Q96NZ1 517 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PINK1Q9BXM7 581 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 MS4A7Q9GZW8 240 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 COMMD4Q9H0A8 199 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 MTIF3Q9H2K0 278 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 HHATLQ9HCP6 504 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ACER3Q9NUN7 267 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM184CQ9NVA4 438 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 EXO1Q9UQ84 846 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SYN3O14994 580 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SIGLEC5O15389 551 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GMDSO60547 372 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SLC43A1O75387 559 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PRKRAO75569 313 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 FGF18O76093 207 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PTHLHP12272 177 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 C6P13671 934 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PTPN2P17706 415 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 LAG3P18627 525 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ANXA7P20073 488 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 IDSP22304 550 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 NFYAP23511 347 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CD70P32970 193 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GDNFP39905 211 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SGSHP51688 502 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 PRKXP51817 358 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CLDN2P57739 230 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 KCNJ10P78508 379 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 FABP5Q01469 135 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 CHRNEQ04844 493 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF33BQ06732 778 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 SIGLEC14Q08ET2 396 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GPR17Q13304 367 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 GPR50Q13585 617 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 HTR4Q13639 388 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZXDCQ2QGD7 858 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 BRAT1Q6PJG6 821 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 IDO2Q6ZQW0 420 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 VRK2Q86Y07 508 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR2L5Q8NG80 312 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR4E2Q8NGC2 313 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR10K1Q8NGX5 313 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR6N2Q8NGY6 317 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 LCN9Q8WX39 176 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 OR5P2Q8WZ92 322 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF707Q96C28 371 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 TCEAL4Q96EI5 215 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 RBM18Q96H35 190 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 DCLRE1CQ96SD1 692 aaKnown RBP5.07□□□□□ -1.6
LIMA1-203ENST00000547825 HRH4Q9H3N8 390 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 BABAM2Q9NXR7 383 aa5.07□□□□□ -1.6
LIMA1-203ENST00000547825 NPAP1Q9NZP6 1156 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms