RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 C16orf45Q96MC5 204 aaPredicted RBP15.48■□□□□ 0.07
CLSTN3-214ENST00000542663 ZNF385AQ96PM9 386 aaKnown RBP15.48■□□□□ 0.07
CLSTN3-214ENST00000542663 ADAM19Q9H013 955 aa15.48■□□□□ 0.07
CLSTN3-214ENST00000542663 EXOSC3Q9NQT5 275 aaKnown RBP15.48■□□□□ 0.07
CLSTN3-214ENST00000542663 OSGIN1Q9UJX0 560 aa15.48■□□□□ 0.07
CLSTN3-214ENST00000542663 PCDHGB4Q9UN71 923 aa15.48■□□□□ 0.07
CLSTN3-214ENST00000542663 TMED7Q9Y3B3 224 aa15.48■□□□□ 0.07
CLSTN3-214ENST00000542663 WDR45Q9Y484 360 aa15.48■□□□□ 0.07
CLSTN3-214ENST00000542663 RNF103-CHMP3A0A140T963 221 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 PRAMEF27A3QJZ7 478 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 ZNF208O43345 1280 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 SPRY1O43609 319 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 NPHS1O60500 1241 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 OR12D1P0DN82 309 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 KRT4P19013 534 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 ARRB2P32121 409 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 IDH3GP51553 393 aaPredicted RBP15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 KCNJ10P78508 379 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 TBRG1Q3YBR2 411 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 OR4F3Q6IEY1 312 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 PAQR6Q6TCH4 344 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 C12orf54Q6X4T0 127 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 C4orf33Q8N1A6 199 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 FNDC5Q8NAU1 212 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 CNOT9Q92600 299 aaKnown RBP15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 RAB8BQ92930 207 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 KATNB1Q9BVA0 655 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 SEC61A2Q9H9S3 476 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 EXD2Q9NVH0 621 aa15.47■□□□□ 0.07
CLSTN3-214ENST00000542663 VENTXO95231 258 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 CRYAAP02489 173 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 G6PDP11413 515 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 DAOP14920 347 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 ALDH3A1P30838 453 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 CALCRP30988 508 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 SRP14P37108 136 aaKnown RBP15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 CHN2P52757 468 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 NAAAQ02083 359 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 LGALS3BPQ08380 585 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 PGS1Q32NB8 556 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 VHLLQ6RSH7 139 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 AAED1Q7RTV5 226 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 ZCCHC24Q8N2G6 241 aaKnown RBP15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 ARFGAP2Q8N6H7 521 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 TMEM99Q8N816 258 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 LINC01356Q8N9X3 169 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 POMGNT2Q8NAT1 580 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 MNS1Q8NEH6 495 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 OR9K2Q8NGE7 335 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 OR1K1Q8NGR3 316 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 XAGE5Q8WWM1 108 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 HPS1Q92902 700 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 ROPN1LQ96C74 230 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 DDIT4LQ96D03 193 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 AURKBQ96GD4 344 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 NAA11Q9BSU3 229 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 MECRQ9BV79 373 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 RAB1BQ9H0U4 201 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 OBP2BQ9NPH6 170 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 POLE3Q9NRF9 147 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 CRNNQ9UBG3 495 aaPredicted RBP15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 MID2Q9UJV3 735 aa15.46■□□□□ 0.07
CLSTN3-214ENST00000542663 SKAP2O75563 359 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 IGFBP1P08833 259 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 CECR9P0C854 216 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 APEX1P27695 318 aaKnown RBP15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 TACR3P29371 465 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 HTR3AP46098 478 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 POLR2HP52434 150 aaKnown RBP15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 CDH15P55291 814 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 TRIP10Q15642 601 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 OTUD3Q5T2D3 398 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 TNFAIP8L2Q6P589 184 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 ANKRD16Q6P6B7 361 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 LINGO2Q7L985 606 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 MYPOPQ86VE0 399 aaPredicted RBP15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 HOMEZQ8IX15 550 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 SEMA6DQ8NFY4 1073 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 ANP32BQ92688 251 aaKnown RBP15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 SNX18Q96RF0 628 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 KCNS3Q9BQ31 491 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 NELFAQ9H3P2 528 aa15.45■□□□□ 0.06
CLSTN3-214ENST00000542663 SMIM23A6NLE4 172 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 NR5A2O00482 541 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 RNASET2O00584 256 aaKnown RBP15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 SCN2BO60939 215 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 AKR7A3O95154 331 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 LGI1O95970 557 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 IGLV1-44P01699 117 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 C1QCP02747 245 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 CLDN8P56748 225 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 TUBA1BP68363 451 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 TUBA4AP68366 448 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 RIN1Q13671 783 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 FAM174BQ3ZCQ3 159 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 ATAD3BQ5T9A4 648 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 RINLQ6ZS11 566 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 ZCCHC23Q6ZST2 131 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 TUBA1AQ71U36 451 aa15.44■□□□□ 0.06
CLSTN3-214ENST00000542663 IFT20Q8IY31 132 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms