RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PCDH7O60245 1069 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ENTPD6O75354 484 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 NCR1O76036 304 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ATG12O94817 140 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ZFPL1O95159 310 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SPDEFO95238 335 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 COX7A2P14406 83 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ENGP17813 658 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 GABRG2P18507 467 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 TUBG1P23258 451 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 TLX1P31314 330 aaPredicted RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ACAA2P42765 397 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 CLDN2P57739 230 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 RPS7P62081 194 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 FGL1Q08830 312 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SIGLEC14Q08ET2 396 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ILKQ13418 452 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 NUMA1Q14980 2115 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PRSS53Q2L4Q9 553 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 VMACQ2NL98 169 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PCGF3Q3KNV8 242 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ZNF385BQ569K4 471 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 C19orf48Q6RUI8 117 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 BCDIN3DQ7Z5W3 292 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 CLECL1Q8IZS7 167 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 LGI4Q8N135 537 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ZNF687Q8N1G0 1237 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 STPG2Q8N412 459 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 FAM181AQ8N9Y4 354 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 OR52P1PQ8NH57 321 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PHOSPHO1Q8TCT1 267 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 OTUB1Q96FW1 271 aaPredicted RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 FAM71F1Q96KD3 344 aaPredicted RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 BMFQ96LC9 184 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 C12orf66Q96MD2 445 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 CHST8Q9H2A9 424 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SEBOXQ9HB31 216 aaPredicted RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 TUBG2Q9NRH3 451 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 MMP17Q9ULZ9 603 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PCDHB11Q9Y5F2 797 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 KCNMB2Q9Y691 235 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ATG2BQ96BY7 2078 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 C1orf226A1L170 272 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 HYKKA2RU49 373 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 BTBD17A6NE02 478 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 KRBOX1C9JBD0 128 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 CLIC1O00299 241 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 CASKO14936 926 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ADAMDEC1O15204 470 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 MBTPS2O43462 519 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SUV39H1O43463 412 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 RGS11O94810 467 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 KDM4BO94953 1096 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 TGFB1P01137 390 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ASGR2P07307 311 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 LINC00614P0C842 121 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 RNH1P13489 461 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 IL1RNP18510 177 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PAICSP22234 425 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 VAMP2P63027 116 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 CSTF1Q05048 431 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ZNF763Q0D2J5 394 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 VEZF1Q14119 521 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PTGES3Q15185 160 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SF3A2Q15428 464 aaKnown RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 TRAM1Q15629 374 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 TOMM34Q15785 309 aaPredicted RBP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ZSWIM7Q19AV6 140 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 MPEG1Q2M385 716 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 EXOC3L2Q2M3D2 409 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 FAM71E1Q6IPT2 247 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 KLBQ86Z14 1044 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 OR8D4Q8NGM9 314 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 OR2L8Q8NGY9 312 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 COQ8AQ8NI60 647 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 SMPDL3AQ92484 453 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 MAL2Q969L2 176 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 CXorf58Q96LI9 332 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PANX1Q96RD7 426 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 YIPF4Q9BSR8 244 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 TBC1D29Q9UFV1 150 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 ICKQ9UPZ9 632 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 PUS1Q9Y606 427 aaKnown RBP eCLIP7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 CDH10Q9Y6N8 788 aa7.39□□□□□ -1.23
PDLIM5-221ENST00000542407 TCRBV21S2A2A0A5A6 115 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 OR52A4PA6NMU1 304 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 H7BY64 318 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 SULT1C2O00338 296 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 SAP18O00422 153 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 GAAP10253 952 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 HOXB6P17509 224 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 PEBP1P30086 187 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 CNR2P34972 360 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 SNTB1Q13884 538 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 C1DQ13901 141 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 RBMS2Q15434 407 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 RNASE12Q5GAN4 147 aaKnown RBP7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 HIST2H2AA3Q6FI13 130 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 C17orf64Q86WR6 236 aa7.38□□□□□ -1.23
PDLIM5-221ENST00000542407 FTMTQ8N4E7 242 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms