RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NKX2-2O95096 273 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 EVX1P49640 407 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 EFNA3P52797 238 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 YPEL5P62699 121 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 LCN1P1Q5VSP4 162 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 ULBP3Q9BZM4 244 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 ERVMER34-1Q9H9K5 563 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 TRIM36Q9NQ86 728 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 GTF2A1LQ9UNN4 478 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 SLC35A3Q9Y2D2 325 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 PTP4A3O75365 173 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 DNAAF1Q8NEP3 725 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 PPP1R3EQ9H7J1 279 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 Q9N2J8 555 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 CLDN16Q9Y5I7 305 aa15.5■□□□□ 0.07
USP28-208ENST00000540438 A0A1W2PPC4 97 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 HCN1O60741 890 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 HK1P19367 917 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 DRD5P21918 477 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 RPS4Y1P22090 263 aaKnown RBP15.49■□□□□ 0.07
USP28-208ENST00000540438 CD1CP29017 333 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 MAP2K3P46734 347 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 GALEQ14376 348 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 QPRTQ15274 297 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 RAB30Q15771 203 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 METAP1DQ6UB28 335 aaPredicted RBP15.49■□□□□ 0.07
USP28-208ENST00000540438 AP3S1Q92572 193 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 FRMD6Q96NE9 622 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 RNF121Q9H920 327 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 BRD7Q9NPI1 651 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 ALG5Q9Y673 324 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 CHP2O43745 196 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 MT-ND5P03915 603 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 RPS5P46782 204 aaKnown RBP15.49■□□□□ 0.07
USP28-208ENST00000540438 Q5BKY6 102 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 STPG1Q5TH74 334 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 ZNF544Q6NX49 715 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 LEG1Q6P5S2 330 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 RTL4Q6ZR62 310 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 VASH1Q7L8A9 365 aaPredicted RBP15.49■□□□□ 0.07
USP28-208ENST00000540438 TRMT10AQ8TBZ6 339 aaKnown RBP15.49■□□□□ 0.07
USP28-208ENST00000540438 PCDHGB2Q9Y5G2 931 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 KIR2DS5A0A0G2JLQ3 304 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 A0A0G2JNG1 304 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 TRBV2A0A0J9YWF9 115 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 CCDC85CA6NKD9 419 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 TMEM150CB9EJG8 249 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 KIR2DS3K7RE56 304 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 LYRM1O43325 122 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 CDC40O60508 579 aaKnown RBP eCLIP15.49■□□□□ 0.07
USP28-208ENST00000540438 AHCYP23526 432 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 EDNRAP25101 427 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 SQSTM1Q13501 440 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 KIR2DS5Q14953 304 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 ZNF563Q8TA94 476 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 PELI1Q96FA3 418 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 ENTPD2Q9Y5L3 495 aa15.49■□□□□ 0.07
USP28-208ENST00000540438 J3QRE1 110 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 AKR7A2O43488 359 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 FBXO45P0C2W1 286 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 OR8G3PP0DMU2 310 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 FGF9P31371 208 aaPredicted RBP15.48■□□□□ 0.07
USP28-208ENST00000540438 RPL6Q02878 288 aaKnown RBP15.48■□□□□ 0.07
USP28-208ENST00000540438 FAAP20Q6NZ36 180 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 SFXN4Q6P4A7 337 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 CD200R1LQ6Q8B3 271 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 TMPRSS11FQ6ZWK6 438 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 GID4Q8IVV7 300 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 THAP4Q8WY91 577 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 TMEM246Q9BRR3 403 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 ANKRD19PQ9H560 264 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 TRAPPC4Q9Y296 219 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 A0A087WV62 115 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 CHURC1-FNTBB4DL54 471 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 SCO2O43819 266 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 CPNE3O75131 537 aaKnown RBP15.48■□□□□ 0.07
USP28-208ENST00000540438 CDKN2AP42771 156 aaKnown RBP15.48■□□□□ 0.07
USP28-208ENST00000540438 FNTBP49356 437 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 CCR6P51684 374 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 LRRC69Q6ZNQ3 347 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 OR52N1Q8NH53 320 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 PPP1R14AQ96A00 147 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 KTI12Q96EK9 354 aaPredicted RBP15.48■□□□□ 0.07
USP28-208ENST00000540438 STACQ99469 402 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 MCUBQ9NWR8 336 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 HS3ST3A1Q9Y663 406 aa15.48■□□□□ 0.07
USP28-208ENST00000540438 TMEM72A0PK05 275 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 CENPXA8MT69 81 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 CLDN4O14493 209 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 ATF1P18846 271 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 MAP3K8P41279 467 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 PPP3R1P63098 170 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 BCL2L15Q5TBC7 163 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 MARCH3Q86UD3 253 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 SGTBQ96EQ0 304 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 WDFY2Q96P53 400 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 EML5Q05BV3 1969 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 SLC22A31A6NKX4 558 aa15.47■□□□□ 0.07
USP28-208ENST00000540438 ELOA3DA6NLF2 546 aaPredicted RBP15.47■□□□□ 0.07
USP28-208ENST00000540438 GPR3P46089 330 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms