RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SLC35F4A4IF30 521 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 CLDN24A6NM45 220 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 WNT11O96014 354 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 C8BP07358 591 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 PAX7P23759 505 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 KHKP50053 298 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 POLR2HP52434 150 aaKnown RBP11.85□□□□□ -0.51
SS18-204ENST00000539244 CASP8Q14790 479 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 ANXA8L1Q5VT79 327 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 C9orf135Q5VTT2 229 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 ZIC4Q8N9L1 334 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 POMGNT2Q8NAT1 580 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 CNOT9Q92600 299 aaKnown RBP11.85□□□□□ -0.51
SS18-204ENST00000539244 TESCQ96BS2 214 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 MSI2Q96DH6 328 aaKnown RBP11.85□□□□□ -0.51
SS18-204ENST00000539244 SORCS2Q96PQ0 1159 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 PIMREGQ9BSJ6 248 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 SF3B5Q9BWJ5 86 aaKnown RBP11.85□□□□□ -0.51
SS18-204ENST00000539244 LGALS13Q9UHV8 139 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 PRDM4Q9UKN5 801 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 MOKQ9UQ07 419 aa11.85□□□□□ -0.51
SS18-204ENST00000539244 LOC390937A0A1W2PQ73 354 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 TLDC2A0PJX2 215 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 AGAP5A6NIR3 686 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 HMGN4O00479 90 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 AP3D1O14617 1153 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 SPAG7O75391 227 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 PDE5AO76074 875 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 BPGMP07738 259 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 RPS4Y1P22090 263 aaKnown RBP11.84□□□□□ -0.51
SS18-204ENST00000539244 TACR3P29371 465 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 SLC1A3P43003 542 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 ETV4P43268 484 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 HPCAP84074 193 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 GGTLC2Q14390 218 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 FAM120AOSQ5T036 256 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 KLHL24Q6TFL4 600 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 ANKRD46Q86W74 232 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 VPS37AQ8NEZ2 397 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 FBXO17Q96EF6 278 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 TRNT1Q96Q11 434 aaKnown RBP11.84□□□□□ -0.51
SS18-204ENST00000539244 DPY30Q9C005 99 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 ADAM19Q9H013 955 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 SLC38A1Q9H2H9 487 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 AKTIPQ9H8T0 292 aa11.84□□□□□ -0.51
SS18-204ENST00000539244 IGHV4-61A0A0C4DH41 118 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 LOC100289279A0A1B0GTE1 492 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 ZC3H12DA2A288 527 aaKnown RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 AQP7P3A6NL99 342 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 GPIP06744 558 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 APEHP13798 732 aaKnown RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 CCNA2P20248 432 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 SNRPD2P62316 118 aaKnown RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 TXNL4AP83876 142 aaKnown RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 EPS8Q12929 822 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 DPY19L1Q2PZI1 675 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 C3orf36Q3SXR2 165 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 GPAT3Q53EU6 434 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 OTUD3Q5T2D3 398 aaPredicted RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 AAED1Q7RTV5 226 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 ABHD12BQ7Z5M8 362 aaPredicted RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 HMGN2P46Q86SG4 172 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 LRRC34Q8IZ02 419 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 OR9K2Q8NGE7 335 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 ZNF385AQ96PM9 386 aaKnown RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 ZNF317Q96PQ6 595 aaPredicted RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 SLC38A2Q96QD8 506 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 SLC35A5Q9BS91 424 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 KATNB1Q9BVA0 655 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 CHODLQ9H9P2 273 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 CA10Q9NS85 328 aa11.83□□□□□ -0.52
SS18-204ENST00000539244 MARCOQ9UEW3 520 aaPredicted RBP11.83□□□□□ -0.52
SS18-204ENST00000539244 IGHV1-18A0A0C4DH31 117 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 LIPT2A6NK58 231 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 B9A039 149 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 TYROBPO43914 113 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 CPSF4O95639 269 aaKnown RBP11.82□□□□□ -0.52
SS18-204ENST00000539244 UQCRBP14927 111 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 ZNF23P17027 643 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 HNF1AP20823 631 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 CHI3L1P36222 383 aaPredicted RBP11.82□□□□□ -0.52
SS18-204ENST00000539244 SERPINF1P36955 418 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 EFNB3Q15768 340 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 GSTA3Q16772 222 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 HIKESHIQ53FT3 197 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 SPANXN4Q5MJ08 99 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 LRRC74BQ6ZQY2 392 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 TMEM99Q8N816 258 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 ANKFN1Q8N957 763 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 ZNF540Q8NDQ6 660 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 OR1K1Q8NGR3 316 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 MAGEE2Q8TD90 523 aaPredicted RBP11.82□□□□□ -0.52
SS18-204ENST00000539244 CCDC115Q96NT0 180 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 FOXN4Q96NZ1 517 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 PLK3Q9H4B4 646 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 MTHFD2LQ9H903 347 aaPredicted RBP11.82□□□□□ -0.52
SS18-204ENST00000539244 CRNNQ9UBG3 495 aaPredicted RBP11.82□□□□□ -0.52
SS18-204ENST00000539244 BTNL2Q9UIR0 455 aa11.82□□□□□ -0.52
SS18-204ENST00000539244 FBXO9Q9UK97 447 aaPredicted RBP11.82□□□□□ -0.52
SS18-204ENST00000539244 ARPC4-TTLL3A0A0A6YYG9 625 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms